Detailed information NTG0067018

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TAO_RS08895
• Genome accession: NZ_AP014836
• Coordinates: 1892849..1893718 (+)
• Length: 289 a.a.
• NCBI ID: WP_096527571.1
• Uniprot ID: -
• Organism: Candidatus Nitrosoglobus terrae strain TAO100
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1887849..1898718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TAO_RS08880 (TAO_1723)	lysA	1888327..1889577 (-)	1251	WP_096527568.1	diaminopimelate decarboxylase	-
TAO_RS10010	lptM	1889581..1889706 (-)	126	WP_231910644.1	LPS translocon maturation chaperone LptM	-
TAO_RS08885 (TAO_1724)	pilB	1889875..1891593 (+)	1719	WP_096527569.1	type IV-A pilus assembly ATPase PilB	Machinery gene
TAO_RS08890 (TAO_1725)	pilC	1891598..1892818 (+)	1221	WP_096527570.1	type II secretion system F family protein	Machinery gene
TAO_RS08895 (TAO_1726)	pilD	1892849..1893718 (+)	870	WP_096527571.1	A24 family peptidase	Machinery gene
TAO_RS08900 (TAO_1727)	coaE	1893743..1894348 (+)	606	Protein_1760	dephospho-CoA kinase	-
TAO_RS09690	yacG	1894370..1894561 (+)	192	WP_172419115.1	DNA gyrase inhibitor YacG	-
TAO_RS08905 (TAO_1728)	-	1894567..1895535 (-)	969	WP_096527573.1	Nudix family hydrolase	-
TAO_RS08910 (TAO_1729)	-	1895569..1895769 (+)	201	WP_096527817.1	DUF2905 domain-containing protein	-
TAO_RS08915 (TAO_1730)	-	1896196..1896951 (+)	756	WP_231910645.1	glycosyltransferase family 2 protein	-
TAO_RS08920 (TAO_1731)	-	1896953..1897237 (+)	285	WP_096527574.1	lipid-A-disaccharide synthase N-terminal domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32549.62 Da
• Isoelectric Point: 7.1335

>NTDB_id=67018 TAO_RS08895 WP_096527571.1 1892849..1893718(+) (pilD) [Candidatus Nitrosoglobus terrae strain TAO100]
METITFLNDHPMSFLGSIFLLGLTIGSFLNVVIYRLPLMMENYWQQQYAELQGNPLPELKQLNLCLPRSHCPRCNHVIQI
WENIPILSYLLLKGRCNHCGSPISPRYLLVEILTAIFSVAIAWRFGVSWQTIAALVLSYALIALTFIDLDHQLLPDSITL
PFLWLGLTLNLFNLFTDIRASVIGAIAGYLSLWLVYHVFRILTHKEGMGYGDFKLLALLGAWLGWIMLPAIILLSSLVGA
VLGTLWLYLSHQSKESPLPFGPYLAAAGWLALMWGRDINQFYLSITGLG

Nucleotide

• Length: 870 bp

>NTDB_id=67018 TAO_RS08895 WP_096527571.1 1892849..1893718(+) (pilD) [Candidatus Nitrosoglobus terrae strain TAO100]
ATGGAAACGATTACCTTCCTTAATGATCACCCGATGAGCTTTTTAGGTTCAATTTTTCTGCTGGGACTTACGATAGGTAG
CTTCCTTAATGTAGTGATTTATCGCCTTCCCCTGATGATGGAGAACTACTGGCAGCAGCAGTACGCAGAATTACAAGGCA
ATCCCTTACCAGAATTAAAACAGTTAAATTTATGCCTCCCTCGATCTCACTGCCCAAGGTGCAATCATGTCATTCAGATC
TGGGAAAATATTCCTATATTGAGCTATTTACTACTCAAAGGCCGCTGCAACCATTGCGGCTCGCCTATCTCTCCTCGTTA
TCTTTTAGTTGAAATTTTAACCGCTATCTTCTCTGTTGCCATTGCTTGGCGATTTGGTGTCAGCTGGCAAACTATTGCCG
CGCTAGTATTAAGCTATGCTCTAATTGCGCTTACTTTTATCGATCTCGATCATCAATTATTGCCCGATAGCATTACCTTA
CCATTTCTCTGGCTAGGGTTAACTCTCAATTTATTTAACCTATTCACTGATATACGGGCTAGTGTTATTGGCGCAATCGC
CGGTTATCTCTCTCTTTGGCTTGTTTATCATGTATTTCGAATACTTACCCATAAAGAAGGCATGGGTTATGGTGACTTTA
AGCTGTTAGCTTTACTGGGCGCTTGGCTAGGCTGGATAATGCTACCCGCTATTATTTTACTCTCTTCATTAGTCGGCGCA
GTGTTAGGCACCCTATGGCTTTATCTATCTCATCAATCCAAAGAATCCCCACTTCCTTTTGGTCCCTATCTTGCGGCTGC
AGGCTGGTTAGCCTTAATGTGGGGACGAGATATCAATCAATTTTATTTATCTATTACTGGGCTTGGCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.59	97.924	0.505
pilD	Vibrio cholerae strain A1552	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	50	93.426	0.467
pilD	Acinetobacter baumannii D1279779	50	93.426	0.467
pilD	Neisseria gonorrhoeae MS11	49.802	87.543	0.436