Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MST17_RS01625 Genome accession   NZ_CP094545
Coordinates   345381..347516 (+) Length   711 a.a.
NCBI ID   WP_180026128.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340381..352516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01605 (MST17_01605) comM 342332..343390 (+) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  MST17_RS01610 (MST17_01610) pilN 343390..344076 (+) 687 WP_180026110.1 PilN domain-containing protein Machinery gene
  MST17_RS01615 (MST17_01615) pilO 344073..344795 (+) 723 WP_078189381.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST17_RS01620 (MST17_01620) pilP 344792..345319 (+) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST17_RS01625 (MST17_01625) pilQ 345381..347516 (+) 2136 WP_180026128.1 type IV pilus secretin PilQ Machinery gene
  MST17_RS01630 (MST17_01630) aroK 347553..348098 (+) 546 WP_078189378.1 shikimate kinase AroK -
  MST17_RS01635 (MST17_01635) aroB 348113..349195 (+) 1083 WP_180026109.1 3-dehydroquinate synthase -
  MST17_RS01640 (MST17_01640) - 349203..350042 (+) 840 WP_180026108.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77498.63 Da        Isoelectric Point: 6.0086

>NTDB_id=670127 MST17_RS01625 WP_180026128.1 345381..347516(+) (pilQ) [Acinetobacter sp. YH16056_T]
MNHVFRQFSMGAVAMAMMQVANAQVSVTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLDQPSRLVLDFDKAQQNLKQSSI
PVATAEASTVDVSSDAQRARLTVNLANAGAFTTRVEGNTFILKINSAQAANYVQPVAQRQQQGISNIGFHRGSNGEGQVV
VDLLGGNTPVDVQQQGSKVVIRTLGNKVPAHLTRRLNVNDFATPVATVDAHNDGGNGVITIQSTGSYEYMAYQTDNKLTV
SLKRPEDKNPLRPKAANHYTGKKISLDFQDIEVRRVLQLLADFTEINMVAADTVQGNITLRLKDVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLSYAKAVDIEKLITEGRNSKNSNSNSNSNSNSNNTDP
LGDSIGSLLSPRGTVSVDPRTNMLIINDTSQKIDQIRKMIDLLDVSVKQVMVEARIVKASTDFTKEMGVKWGILSQGINQ
NDHLLVGGSDTTLWDLKTPDDDGKYTIQRPSNLNVDLGVTAEGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKV
LTADKQQAKVASGQEIPYQTTTGTGSNATSSTEFKEALLSLDVTPSITPDGKVQMKLNIKSDSPAGYAQNGEIILNKNEI
NTDVLVNNGETVVLGGIFEQENSVNQTKVPFLGDLPYVGRLFRKDMKSDKKRELLIFVTPRIVNDSVTRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=670127 MST17_RS01625 WP_180026128.1 345381..347516(+) (pilQ) [Acinetobacter sp. YH16056_T]
ATGAATCATGTGTTTCGTCAGTTTTCGATGGGGGCTGTTGCAATGGCGATGATGCAAGTTGCCAATGCTCAGGTGAGTGT
AACCAATGTGGTACCAATGCAAATTCCAGGTCAAGGGACTGAAATTCGCGTGATGTTTAATGGCTTGCCGCCGCAACCAC
AAGCTTATCAACTCGATCAACCATCACGACTAGTTTTAGACTTTGATAAAGCACAGCAAAATTTAAAACAAAGTTCAATT
CCTGTTGCAACGGCTGAAGCGAGCACTGTGGATGTGAGTTCGGATGCACAACGTGCGCGCTTAACTGTGAATTTAGCCAA
TGCTGGTGCTTTTACCACGCGTGTTGAAGGTAATACCTTTATTTTAAAAATCAACTCTGCACAAGCTGCAAATTATGTAC
AGCCTGTAGCACAACGTCAGCAACAGGGCATCTCAAATATTGGTTTCCACCGTGGTTCTAATGGTGAAGGTCAAGTTGTT
GTTGATTTACTGGGTGGAAATACTCCCGTTGATGTTCAACAGCAAGGCAGTAAAGTGGTGATCCGTACTTTAGGCAATAA
AGTACCTGCACATTTGACGCGCCGTTTAAATGTCAATGATTTTGCAACGCCAGTTGCTACGGTTGATGCACATAATGATG
GCGGTAATGGGGTGATTACCATTCAGTCGACGGGTAGCTATGAATATATGGCGTATCAAACGGATAATAAATTAACGGTG
AGTTTGAAACGTCCGGAAGATAAGAATCCATTACGTCCTAAAGCCGCAAATCATTACACCGGTAAGAAAATTTCATTAGA
CTTCCAAGATATTGAAGTACGTCGTGTGCTACAACTTTTGGCTGATTTCACCGAAATTAATATGGTTGCTGCTGATACCG
TACAAGGGAATATTACACTTCGTTTGAAAGACGTGCCTTGGGATCAAGCGCTAGACATTGTTTTGAAAACCAAGAATTTG
GATAAACGTCGTAATGGTAATGTGATTTGGATTGCGCCTGTATCTGAGTTGATTAAAGCGGAAGAAGAAGAAGCTAAAGC
TATTGCACAAAGTGTTAAATTGGCACCGTTACAAACTGAGTATATTCAACTTAGCTATGCTAAAGCCGTAGATATAGAAA
AGTTAATTACCGAAGGTCGTAATTCAAAAAACTCGAATTCTAATTCTAATTCTAATTCTAATTCTAACAATACAGACCCT
TTAGGTGACAGTATTGGTTCTTTATTAAGCCCACGAGGAACAGTTTCTGTAGATCCTCGTACTAATATGCTGATTATTAA
TGACACATCACAAAAAATTGATCAAATACGTAAAATGATTGATTTATTGGATGTTTCCGTCAAGCAAGTCATGGTCGAGG
CGCGTATTGTAAAAGCGTCTACCGACTTTACGAAAGAAATGGGAGTGAAATGGGGAATCCTGTCTCAAGGGATTAACCAA
AATGACCACTTATTGGTAGGTGGTAGTGATACCACACTTTGGGACTTAAAAACGCCAGATGATGATGGGAAATATACCAT
TCAACGTCCAAGTAACTTAAACGTGGACTTAGGTGTAACTGCTGAGGGGGCGAGCCGAATTGCCTTTGGCTTGATTAGTC
TTTCTGATTTTATGTTGGATTTAGAACTTTCTGCTTTACAAGCGGATGGTTATGGTGAAGTCATTTCTACACCAAAAGTA
CTGACAGCGGATAAACAACAGGCCAAAGTTGCATCAGGTCAAGAGATTCCGTATCAAACCACAACGGGTACCGGTTCAAA
TGCGACCTCTTCTACTGAGTTTAAAGAAGCTTTATTAAGTCTTGATGTCACGCCTAGCATTACTCCTGATGGTAAAGTTC
AAATGAAGCTGAATATTAAGAGTGATTCACCAGCTGGTTATGCGCAAAATGGTGAAATTATCCTAAATAAAAATGAAATT
AATACTGATGTCTTGGTCAACAATGGAGAGACTGTTGTTCTTGGTGGAATATTCGAACAAGAAAATTCTGTCAATCAAAC
GAAGGTTCCTTTCCTTGGAGATTTACCATATGTAGGAAGACTTTTCCGTAAAGATATGAAATCTGATAAAAAGAGAGAGT
TGCTGATTTTTGTTACTCCGCGAATTGTTAATGACAGTGTTACGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(545-703)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(40-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.38

100

0.767
  pilQ Acinetobacter baumannii strain A118

75.242

100

0.765
  comQ Acinetobacter baylyi ADP1

75.562

100

0.757
  pilQ Pseudomonas aeruginosa PAK

40.162

100

0.419
  pilQ Legionella pneumophila strain ERS1305867

36.441

99.578

0.363
  pilQ Legionella pneumophila strain Lp02

36.441

99.578

0.363