Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MST17_RS01610 Genome accession   NZ_CP094545
Coordinates   343390..344076 (+) Length   228 a.a.
NCBI ID   WP_180026110.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338390..349076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01595 (MST17_01595) - 338766..339569 (+) 804 WP_180021660.1 putative RNA methyltransferase -
  MST17_RS01600 (MST17_01600) ponA 339626..342166 (-) 2541 WP_180026111.1 penicillin-binding protein PBP1a -
  MST17_RS01605 (MST17_01605) comM 342332..343390 (+) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  MST17_RS01610 (MST17_01610) pilN 343390..344076 (+) 687 WP_180026110.1 PilN domain-containing protein Machinery gene
  MST17_RS01615 (MST17_01615) pilO 344073..344795 (+) 723 WP_078189381.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST17_RS01620 (MST17_01620) pilP 344792..345319 (+) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST17_RS01625 (MST17_01625) pilQ 345381..347516 (+) 2136 WP_180026128.1 type IV pilus secretin PilQ Machinery gene
  MST17_RS01630 (MST17_01630) aroK 347553..348098 (+) 546 WP_078189378.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25418.95 Da        Isoelectric Point: 5.4040

>NTDB_id=670124 MST17_RS01610 WP_180026110.1 343390..344076(+) (pilN) [Acinetobacter sp. YH16056_T]
MAKINLLPWRDELREKRKKEFIALCIGAFLIGVIGVGLTWLYFDHKLKDQEQANQLIISHNQNLDVQLKSLDGLQEQRNA
IIERMKLIQGLQGQRPIAVHLVDELVRVTPANMYITKFERNGDKFMIEGRAESPNTVADLLRNLEASPWYRNAFMSSFLV
AEEKKDKAPTSVVPRVEESYGAFTVTADLEQIAQPTINDPAANAGQSASSAQTSDAQTAAEPTPEAAK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=670124 MST17_RS01610 WP_180026110.1 343390..344076(+) (pilN) [Acinetobacter sp. YH16056_T]
ATGGCAAAAATTAACTTGCTCCCTTGGCGTGATGAGCTAAGAGAGAAACGAAAAAAAGAATTTATTGCACTTTGTATTGG
GGCTTTCTTAATTGGGGTAATTGGGGTGGGTTTAACATGGTTGTACTTTGATCACAAATTAAAAGATCAAGAACAAGCGA
ACCAATTGATTATCAGTCATAACCAAAACTTAGATGTTCAATTAAAGTCTTTGGATGGTTTACAGGAACAGCGTAATGCC
ATTATTGAACGAATGAAGTTGATTCAAGGCTTACAAGGTCAACGTCCAATCGCTGTACATCTTGTAGATGAATTGGTTCG
TGTGACACCTGCCAATATGTACATCACAAAATTTGAACGTAATGGCGACAAATTTATGATCGAAGGGCGTGCGGAAAGTC
CAAACACTGTTGCAGATCTACTGCGTAATTTGGAAGCATCACCTTGGTATCGTAATGCCTTCATGAGCTCATTCCTTGTG
GCGGAAGAGAAAAAAGACAAAGCGCCGACGTCAGTGGTTCCTCGCGTAGAAGAATCTTATGGTGCATTTACTGTGACTGC
TGATTTGGAGCAAATTGCGCAGCCGACCATTAATGATCCAGCAGCAAATGCAGGACAGTCAGCTTCATCGGCGCAAACAT
CTGACGCACAAACTGCAGCAGAACCAACTCCGGAGGCTGCAAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.014

93.421

0.645
  comN Acinetobacter baylyi ADP1

71.503

84.649

0.605