Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   MST17_RS01620 Genome accession   NZ_CP094545
Coordinates   344792..345319 (+) Length   175 a.a.
NCBI ID   WP_078192530.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339792..350319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01605 (MST17_01605) comM 342332..343390 (+) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  MST17_RS01610 (MST17_01610) pilN 343390..344076 (+) 687 WP_180026110.1 PilN domain-containing protein Machinery gene
  MST17_RS01615 (MST17_01615) pilO 344073..344795 (+) 723 WP_078189381.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST17_RS01620 (MST17_01620) pilP 344792..345319 (+) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST17_RS01625 (MST17_01625) pilQ 345381..347516 (+) 2136 WP_180026128.1 type IV pilus secretin PilQ Machinery gene
  MST17_RS01630 (MST17_01630) aroK 347553..348098 (+) 546 WP_078189378.1 shikimate kinase AroK -
  MST17_RS01635 (MST17_01635) aroB 348113..349195 (+) 1083 WP_180026109.1 3-dehydroquinate synthase -
  MST17_RS01640 (MST17_01640) - 349203..350042 (+) 840 WP_180026108.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19253.35 Da        Isoelectric Point: 7.1660

>NTDB_id=670126 MST17_RS01620 WP_078192530.1 344792..345319(+) (pilP) [Acinetobacter sp. YH16056_T]
MKMNKLALSVMVGFVLAGCESRIDVVNQEMANIRNQAPLAIEPAPDFVPVETFNYAAHSLKSPFLPSSLAAELKIMAGKR
VYPNLSRQPQPLESYALETLNMKGSMRNQSGQILALIQTPDGEVERIQRGSYMGLNHGRVVNITPTQIDLIEIIPDGREG
YVERPRSLILIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=670126 MST17_RS01620 WP_078192530.1 344792..345319(+) (pilP) [Acinetobacter sp. YH16056_T]
ATGAAAATGAATAAATTGGCACTTTCTGTGATGGTTGGATTTGTATTGGCTGGTTGTGAATCACGTATTGATGTGGTCAA
TCAAGAGATGGCAAATATACGCAATCAAGCTCCACTAGCGATTGAACCTGCGCCAGATTTTGTACCTGTCGAAACTTTTA
ATTATGCGGCGCACTCTTTAAAAAGTCCGTTCTTGCCAAGTTCATTGGCAGCAGAACTTAAAATCATGGCAGGTAAGCGT
GTTTATCCAAACTTGAGCCGTCAGCCTCAACCTTTGGAGAGTTATGCACTCGAAACCCTGAATATGAAGGGTAGTATGCG
TAACCAATCTGGGCAAATATTAGCCTTGATTCAGACACCTGATGGTGAAGTTGAGCGTATTCAACGTGGAAGTTATATGG
GGCTCAATCATGGTCGAGTGGTAAATATTACCCCGACTCAGATTGATTTGATTGAGATTATTCCGGATGGGCGAGAAGGA
TATGTAGAGCGTCCTAGAAGTCTCATATTAATTGGACCAGCACCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76

100

0.76
  comL Acinetobacter baylyi ADP1

68.023

98.286

0.669