Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MST17_RS01380 Genome accession   NZ_CP094545
Coordinates   295207..296436 (-) Length   409 a.a.
NCBI ID   WP_180026540.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 290207..301436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01355 (MST17_01355) - 291508..291831 (+) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -
  MST17_RS01360 (MST17_01360) rlmB 292009..292767 (+) 759 WP_180026537.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MST17_RS01365 (MST17_01365) - 292776..293696 (+) 921 WP_373685444.1 DMT family transporter -
  MST17_RS01370 (MST17_01370) coaE 293711..294313 (-) 603 WP_180026539.1 dephospho-CoA kinase -
  MST17_RS01375 (MST17_01375) pilD 294323..295141 (-) 819 WP_180026549.1 A24 family peptidase Machinery gene
  MST17_RS01380 (MST17_01380) pilC 295207..296436 (-) 1230 WP_180026540.1 type II secretion system F family protein Machinery gene
  MST17_RS01385 (MST17_01385) pilB 296469..298178 (-) 1710 WP_180026541.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MST17_RS01390 (MST17_01390) tpiA 298454..299245 (+) 792 WP_180004673.1 triose-phosphate isomerase -
  MST17_RS01395 (MST17_01395) secG 299259..299588 (+) 330 WP_078192560.1 preprotein translocase subunit SecG -
  MST17_RS01425 (MST17_01425) rimP 300519..301043 (+) 525 WP_078189416.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44818.18 Da        Isoelectric Point: 9.8134

>NTDB_id=670121 MST17_RS01380 WP_180026540.1 295207..296436(-) (pilC) [Acinetobacter sp. YH16056_T]
MAVKKAQMMPTFSYEGVDRKGAKIKGEMPSRNMALAKVTLRKQGITIKTIREKRKNILEGLMKKKVSTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAAVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFFLIIGIGAVIA
GFMEAKKRSKAFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYETAVLKIREDVA
TGQQLQFAMRVTDKFPPMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=670121 MST17_RS01380 WP_180026540.1 295207..296436(-) (pilC) [Acinetobacter sp. YH16056_T]
ATGGCTGTAAAAAAAGCGCAGATGATGCCAACCTTCAGTTATGAAGGCGTGGATCGCAAAGGGGCGAAAATCAAAGGGGA
AATGCCTTCGCGTAATATGGCTTTAGCCAAAGTCACTTTACGTAAGCAAGGCATCACCATTAAAACCATTCGAGAAAAAC
GCAAAAATATTCTCGAAGGCTTGATGAAAAAGAAAGTATCCACTTTGGATATCACGGTATTCACGCGCCAACTTGCAACC
ATGATGAAAGCCGGTGTACCGCTCGTTCAGGGTTTTGAAATCGTGGCGGAAGGCCTAGAAAACCCAGCCATGCGTGAAGT
GGTCTTGGGGATCAAAGGTGAAGTTGAAGGCGGTAATACCTTTGCTGGTGCGCTGCGCAAATATCCGCAGTATTTCGATA
ACCTATTTTGCTCCTTGGTTGAATCAGGTGAACAGTCGGGTGCATTGGAAACCATGCTAGACCGTGTTGCCATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAAAAAATCAAAAAAGCCATGAAATACCCAGCAGCGGTCATCGTTGTCGCTGTTATTGT
GACGATTATTTTGATGGTAAAAGTGGTTCCCGTATTCCAAGACTTGTTTTCATCATTTGGTGCAGACTTACCTGCCTTTA
CCAAAATGGTGGTCAACATGTCGGAATGGATGCAAAAATATTGGTTCTTCCTCATCATTGGAATTGGAGCTGTGATTGCT
GGTTTCATGGAAGCGAAAAAACGTAGCAAGGCTTTCCGTGACTTCTTGGACAAAGCTGCACTGAAAGCACCGATTTTTGG
TGATTTGGTTTATAAAGCAATTATTGCCCGCTACAGCCGTACCTTGGCAACCACATTTGCAGCCGGTGTACCCTTAATTG
ATGCGCTTGAATCAACTGCAGGTGCAACCAACAACGTGGTATATGAAACAGCTGTGTTAAAAATTCGTGAAGATGTGGCG
ACCGGCCAGCAATTGCAATTCGCCATGCGTGTCACCGATAAATTTCCACCTATGGCAGTCCAAATGGTCGCTATTGGTGA
AGAGTCTGGTGCTTTAGATGCCATGCTAGATAAAGTGGCGACACATTATGAGAATGAAGTAGATAATGCCGTAGATGGCT
TAACCTCGATGATGGAACCCTTAATTATGGCGGTACTGGGTGTCCTCGTTGGTGGTCTTGTGATTGCAATGTACCTTCCA
ATCTTCCAAATGGGTTCAGTGGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.461

99.756

0.892
  pilC Acinetobacter baylyi ADP1

84.069

99.756

0.839
  pilC Pseudomonas stutzeri DSM 10701

61.235

99.022

0.606
  pilC Legionella pneumophila strain ERS1305867

53.333

99.022

0.528
  pilG Neisseria gonorrhoeae MS11

45.865

97.555

0.447
  pilG Neisseria meningitidis 44/76-A

45.614

97.555

0.445
  pilC Vibrio cholerae strain A1552

43.032

100

0.43
  pilC Vibrio campbellii strain DS40M4

40.441

99.756

0.403