Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MST17_RS01375 Genome accession   NZ_CP094545
Coordinates   294323..295141 (-) Length   272 a.a.
NCBI ID   WP_180026549.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 289323..300141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01355 (MST17_01355) - 291508..291831 (+) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -
  MST17_RS01360 (MST17_01360) rlmB 292009..292767 (+) 759 WP_180026537.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MST17_RS01365 (MST17_01365) - 292776..293696 (+) 921 WP_373685444.1 DMT family transporter -
  MST17_RS01370 (MST17_01370) coaE 293711..294313 (-) 603 WP_180026539.1 dephospho-CoA kinase -
  MST17_RS01375 (MST17_01375) pilD 294323..295141 (-) 819 WP_180026549.1 A24 family peptidase Machinery gene
  MST17_RS01380 (MST17_01380) pilC 295207..296436 (-) 1230 WP_180026540.1 type II secretion system F family protein Machinery gene
  MST17_RS01385 (MST17_01385) pilB 296469..298178 (-) 1710 WP_180026541.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MST17_RS01390 (MST17_01390) tpiA 298454..299245 (+) 792 WP_180004673.1 triose-phosphate isomerase -
  MST17_RS01395 (MST17_01395) secG 299259..299588 (+) 330 WP_078192560.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 30297.37 Da        Isoelectric Point: 8.2652

>NTDB_id=670120 MST17_RS01375 WP_180026549.1 294323..295141(-) (pilD) [Acinetobacter sp. YH16056_T]
MYIAVGIFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDETKITLSTPASTCPKCKTPIRWYQNIPVISWIV
LRGKCGSCQNPISSRYPLIELLTMVCALIVVAVFGPTIQMLFGLVLTYVLIALTFIDFDTQLLPDRYTLPLAALGLGVNS
TAIYTSATSAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPFLLPLIVLLSSLVGAIIGIILLKVRK
DNQPFAFGPYIAIAGWIAFLWGDQIMKIYLGQ

Nucleotide


Download         Length: 819 bp        

>NTDB_id=670120 MST17_RS01375 WP_180026549.1 294323..295141(-) (pilD) [Acinetobacter sp. YH16056_T]
ATGTATATCGCAGTTGGGATTTTTAGTCTTTGCATCGGTAGTTTTTTGAATGTGGTGATTTACCGCACGCCGAAGATGAT
GGAACAAGAATGGCGCACAGATTGCCAACTATTTTTGCATCCAGACCAACCGATTATTGATGAAACCAAGATTACCCTGA
GTACCCCTGCTTCAACCTGTCCAAAATGTAAAACGCCCATTCGTTGGTATCAAAACATTCCTGTCATCAGTTGGATTGTG
TTACGTGGAAAATGTGGAAGTTGCCAAAACCCGATCAGTAGCCGTTATCCACTGATCGAGCTACTCACCATGGTCTGTGC
GCTGATTGTTGTTGCAGTTTTTGGTCCAACCATCCAGATGCTGTTTGGTTTGGTGCTGACTTATGTCTTGATTGCCTTAA
CATTTATTGACTTTGACACCCAACTTTTACCTGACCGTTATACCCTTCCTTTGGCTGCACTCGGACTTGGCGTGAATAGC
ACTGCCATTTATACCTCTGCAACCTCAGCCATTTGGGGATATATCATCGGCTTCTTATGCCTATGGATCGTTTACTATTT
ATTTAAAATTATCACTGGCAAAGAAGGCATGGGCTATGGTGACTTTAAGCTTTTAGCTGCCTTGGGTGCATGGATGGGCC
CTTTCCTGCTTCCACTGATTGTATTACTCTCTTCACTAGTGGGTGCAATCATTGGCATTATTTTGCTCAAAGTTCGTAAA
GATAACCAACCTTTTGCATTTGGTCCCTATATTGCCATCGCCGGATGGATCGCCTTTTTATGGGGTGATCAAATTATGAA
AATTTATTTGGGTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-113)

Type IV leader peptidase family (Peptidase_A24)

(124-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

82.657

99.632

0.824
  pilD Acinetobacter nosocomialis M2

82.657

99.632

0.824
  pilD Vibrio cholerae strain A1552

54.135

97.794

0.529
  pilD Vibrio campbellii strain DS40M4

53.558

98.162

0.526
  pilD Neisseria gonorrhoeae MS11

48.106

97.059

0.467