Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MST16_RS15440 Genome accession   NZ_CP094541
Coordinates   3128136..3129362 (+) Length   408 a.a.
NCBI ID   WP_168378204.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3123136..3134362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15395 (MST16_15365) rimP 3123529..3124053 (-) 525 WP_078192559.1 ribosome maturation factor RimP -
  MST16_RS15425 (MST16_15395) secG 3124984..3125313 (-) 330 WP_078192560.1 preprotein translocase subunit SecG -
  MST16_RS15430 (MST16_15400) tpiA 3125327..3126118 (-) 792 WP_180092145.1 triose-phosphate isomerase -
  MST16_RS15435 (MST16_15405) pilB 3126394..3128103 (+) 1710 WP_180004674.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MST16_RS15440 (MST16_15410) pilC 3128136..3129362 (+) 1227 WP_168378204.1 type II secretion system F family protein Machinery gene
  MST16_RS15445 (MST16_15415) pilD 3129362..3130222 (+) 861 WP_180004675.1 A24 family peptidase Machinery gene
  MST16_RS15450 (MST16_15420) coaE 3130232..3130834 (+) 603 WP_180092148.1 dephospho-CoA kinase -
  MST16_RS15455 (MST16_15425) - 3130849..3131769 (-) 921 WP_373686350.1 DMT family transporter -
  MST16_RS15460 (MST16_15430) rlmB 3131778..3132536 (-) 759 WP_180092154.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MST16_RS15465 (MST16_15435) - 3132714..3133037 (-) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44751.09 Da        Isoelectric Point: 9.8134

>NTDB_id=670104 MST16_RS15440 WP_168378204.1 3128136..3129362(+) (pilC) [Acinetobacter sp. YH16040_T]
MAVKKAQMMPTFSYEGVDRKGAKIKGEMPSRNMALAKVTLRKQGITIKTIREKRKNILEGLMKKKVSTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAAVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFFLIIGIGAVIA
GFMEAKKRSKAFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYETAVLKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=670104 MST16_RS15440 WP_168378204.1 3128136..3129362(+) (pilC) [Acinetobacter sp. YH16040_T]
ATGGCTGTAAAAAAAGCGCAGATGATGCCAACCTTCAGTTATGAAGGCGTGGATCGCAAAGGGGCGAAAATCAAAGGGGA
AATGCCTTCGCGTAATATGGCTTTAGCCAAAGTCACTTTACGTAAGCAAGGCATCACCATTAAAACCATTCGAGAAAAAC
GCAAAAATATTCTCGAAGGCTTGATGAAAAAGAAAGTATCCACTTTGGATATCACGGTATTCACGCGCCAACTTGCAACC
ATGATGAAAGCCGGTGTACCGCTCGTTCAGGGTTTTGAAATCGTGGCGGAAGGCCTAGAAAACCCAGCCATGCGTGAAGT
GGTCTTGGGGATCAAAGGTGAAGTTGAAGGCGGTAATACCTTTGCTGGTGCGCTGCGCAAATATCCGCAGTATTTCGATA
ACCTATTTTGCTCCTTGGTTGAATCAGGTGAACAGTCGGGTGCACTTGAAACCATGCTAGACCGTGTTGCCATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAAAAAATCAAAAAAGCCATGAAATACCCAGCAGCGGTCATCGTTGTCGCTGTTATTGT
GACGATTATTTTGATGGTAAAAGTGGTTCCCGTATTCCAAGACTTGTTTTCATCATTTGGTGCAGACTTACCTGCCTTTA
CCAAAATGGTGGTCAACATGTCGGAATGGATGCAAAAATATTGGTTCTTCCTCATCATTGGAATTGGAGCTGTGATTGCT
GGTTTCATGGAAGCGAAAAAACGTAGCAAGGCTTTCCGTGACTTCTTGGACAAAGCTGCACTGAAAGCACCGATTTTTGG
TGATTTGGTTTATAAAGCAATTATTGCCCGCTACAGCCGTACCTTGGCAACCACATTTGCAGCCGGTGTACCCTTAATTG
ATGCGCTTGAATCAACTGCAGGTGCAACCAACAACGTGGTATATGAAACAGCTGTGTTAAAAATTCGTGAAGATGTGGCG
ACCGGCCAGCAATTGCAATTCGCCATGCGTGTCACCGATAAATTTCCCTCTATGGCGGTTCAAATGGTGGCTATTGGTGA
AGAATCAGGTGCTTTAGATGCCATGCTAGATAAAGTGGCAACGCATTATGAAAACGAAGTTGATAATGCCGTAGATGGCT
TAACCTCGATGATGGAACCCTTAATTATGGCGGTACTGGGTGTCCTCGTTGGTGGTCTTGTGATTGCAATGTATCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.706

100

0.897
  pilC Acinetobacter baylyi ADP1

84.069

100

0.841
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

45.865

97.794

0.449
  pilG Neisseria meningitidis 44/76-A

45.614

97.794

0.446
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

40.295

99.755

0.402