Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MST16_RS15445 Genome accession   NZ_CP094541
Coordinates   3129362..3130222 (+) Length   286 a.a.
NCBI ID   WP_180004675.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3124362..3135222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15425 (MST16_15395) secG 3124984..3125313 (-) 330 WP_078192560.1 preprotein translocase subunit SecG -
  MST16_RS15430 (MST16_15400) tpiA 3125327..3126118 (-) 792 WP_180092145.1 triose-phosphate isomerase -
  MST16_RS15435 (MST16_15405) pilB 3126394..3128103 (+) 1710 WP_180004674.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MST16_RS15440 (MST16_15410) pilC 3128136..3129362 (+) 1227 WP_168378204.1 type II secretion system F family protein Machinery gene
  MST16_RS15445 (MST16_15415) pilD 3129362..3130222 (+) 861 WP_180004675.1 A24 family peptidase Machinery gene
  MST16_RS15450 (MST16_15420) coaE 3130232..3130834 (+) 603 WP_180092148.1 dephospho-CoA kinase -
  MST16_RS15455 (MST16_15425) - 3130849..3131769 (-) 921 WP_373686350.1 DMT family transporter -
  MST16_RS15460 (MST16_15430) rlmB 3131778..3132536 (-) 759 WP_180092154.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MST16_RS15465 (MST16_15435) - 3132714..3133037 (-) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32023.43 Da        Isoelectric Point: 8.0503

>NTDB_id=670105 MST16_RS15445 WP_180004675.1 3129362..3130222(+) (pilD) [Acinetobacter sp. YH16040_T]
MQELITYLINTPIAMYFAVGIFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDETKITLSTPASTCPKCKTP
IRWYQNIPVISWIVLRGKCGSCQNPISSRYPLIELLTMICALIVVAVFGPTIQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYAIYTSATSAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPFLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGDQIMKIYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=670105 MST16_RS15445 WP_180004675.1 3129362..3130222(+) (pilD) [Acinetobacter sp. YH16040_T]
ATGCAAGAATTAATAACATATTTAATCAATACCCCAATTGCGATGTATTTCGCAGTTGGGATTTTTAGTCTTTGTATTGG
TAGTTTTTTGAATGTGGTGATTTACCGCACACCAAAGATGATGGAACAAGAATGGCGCACAGATTGCCAACTGTTTTTAC
ATCCAGACCAACCGATTATTGATGAAACAAAGATCACACTAAGTACCCCTGCTTCAACCTGCCCAAAATGCAAAACGCCC
ATTCGTTGGTATCAAAACATTCCGGTCATCAGTTGGATTGTGTTACGCGGAAAATGTGGAAGTTGCCAAAACCCGATCAG
TAGCCGTTATCCACTGATCGAGCTACTCACCATGATCTGCGCGCTGATTGTTGTTGCTGTTTTTGGCCCAACCATCCAAA
TGCTGTTTGGTCTGGTGCTGACTTATGTATTGATTGCATTAACATTTATTGATTTTGACACCCAACTTTTACCTGACCGT
TATACCCTTCCTTTAGCTGCACTCGGGCTTGGCGTGAATAGCTATGCCATTTATACCTCTGCAACCTCAGCCATTTGGGG
ATATATCATCGGCTTCTTATGCCTATGGATCGTTTACTATTTATTTAAAATTATCACTGGCAAAGAAGGTATGGGCTATG
GTGACTTTAAGCTTTTAGCTGCCTTGGGTGCATGGATGGGCCCTTTCCTGCTTCCACTGATTGTATTACTCTCTTCACTG
GTAGGTGCAATCATTGGCATTATTTTGCTCAAGGTTCGTAAAGAAAACCAACCTTTTGCATTTGGTCCCTATATTGCCAT
CGCCGGATGGATCGCCTTTTTATGGGGTGATCAAATTATGAAAATTTATTTGGGTCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

80

99.65

0.797
  pilD Acinetobacter nosocomialis M2

80

99.65

0.797
  pilD Vibrio cholerae strain A1552

54.135

93.007

0.503
  pilD Vibrio campbellii strain DS40M4

53.558

93.357

0.5
  pilD Neisseria gonorrhoeae MS11

47.253

95.455

0.451