Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG788_RS17240 Genome accession   NZ_CP109040
Coordinates   3933381..3933986 (-) Length   201 a.a.
NCBI ID   WP_328558268.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3928381..3938986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS17225 (OG788_17255) - 3929879..3930841 (+) 963 WP_351548209.1 hypothetical protein -
  OG788_RS17230 (OG788_17260) clpX 3931136..3932422 (-) 1287 WP_266758728.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG788_RS17235 (OG788_17265) clpP 3932583..3933263 (-) 681 WP_266758730.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG788_RS17240 (OG788_17270) clpP 3933381..3933986 (-) 606 WP_328558268.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG788_RS17245 (OG788_17275) tig 3934452..3935825 (-) 1374 WP_406371810.1 trigger factor -
  OG788_RS17260 (OG788_17290) - 3936443..3936889 (-) 447 WP_406371812.1 NUDIX domain-containing protein -
  OG788_RS17265 (OG788_17295) - 3937088..3937282 (-) 195 WP_016435177.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21245.19 Da        Isoelectric Point: 4.6663

>NTDB_id=670062 OG788_RS17240 WP_328558268.1 3933381..3933986(-) (clpP) [Streptomyces sp. NBC_00647]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKEYGLIDDIVPTAAGMPGGGGTGAS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=670062 OG788_RS17240 WP_328558268.1 3933381..3933986(-) (clpP) [Streptomyces sp. NBC_00647]
ATGCCCACAGCTGCCGGCGACCCTATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCGCCGACCCGGACA
AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC
AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCCGGCAA
GCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGTCTCGCGGGCTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCGTTCCACACCGGTCAGACCGTCGAGCAG
ATCACTCGTGACTCGGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCGTGCC
CACCGCTGCCGGTATGCCGGGCGGTGGCGGCACGGGGGCGTCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.684

93.035

0.527
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

94.03

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

94.03

0.488
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.023

86.567

0.468
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMD-9

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443