Detailed information NTG0670060

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG788_RS17230
• Genome accession: NZ_CP109040
• Coordinates: 3931136..3932422 (-)
• Length: 428 a.a.
• NCBI ID: WP_266758728.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00647
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3926136..3937422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG788_RS17220 (OG788_17250)	-	3927091..3929742 (-)	2652	WP_351548212.1	valine--tRNA ligase	-
OG788_RS17225 (OG788_17255)	-	3929879..3930841 (+)	963	WP_351548209.1	hypothetical protein	-
OG788_RS17230 (OG788_17260)	clpX	3931136..3932422 (-)	1287	WP_266758728.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG788_RS17235 (OG788_17265)	clpP	3932583..3933263 (-)	681	WP_266758730.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG788_RS17240 (OG788_17270)	clpP	3933381..3933986 (-)	606	WP_328558268.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG788_RS17245 (OG788_17275)	tig	3934452..3935825 (-)	1374	WP_406371810.1	trigger factor	-
OG788_RS17260 (OG788_17290)	-	3936443..3936889 (-)	447	WP_406371812.1	NUDIX domain-containing protein	-
OG788_RS17265 (OG788_17295)	-	3937088..3937282 (-)	195	WP_016435177.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46997.82 Da
• Isoelectric Point: 4.7847

>NTDB_id=670060 OG788_RS17230 WP_266758728.1 3931136..3932422(-) (clpX) [Streptomyces sp. NBC_00647]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENSAGQNREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKLIESRAGAKGIGFGATIRSKRELESKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
ADVVLRNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=670060 OG788_RS17230 WP_266758728.1 3931136..3932422(-) (clpX) [Streptomyces sp. NBC_00647]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGTCAGGAGTCG
GCCAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACAGCGCGGGCCAGAACCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTGGGCCCCACGGGTTCCGGCAAGACGCTCCTCGCCCAGA
CTCTCGCGCGCATGCTGAACGTTCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGATACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGTAAGAGCGAAAACCCGTCGATCACGCGCGATGTGTCCGGCGAGGGCGTGCAGCAGGCTC
TCCTGAAGATCCTCGAGGGCACGACGGCCTCGGTGCCGCCCCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCTCGGGCCTGGAGAAGCTCATCGAGTCCCGGGCCGGCGC
GAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCGCGAGCTGGAGTCGAAGGACCAGTTCGAGGACGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGTCTCCCGGTGATCACCTCGGTCCACAACCTGGACCGC
GAGGCCCTCCTCCAGATCCTGGTCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGAGAGGCCCTTGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGAGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGCCGTGATGTACGAGGTTCCGTCCCGCAAGGACGTCGCCCGCGTGGTCATCACC
GCCGACGTGGTCCTGAGGAACGTCAACCCGACCCTGATCCCGCGCGACGCACGGGGCCGGGGCCCGGGGGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.438	93.925	0.586
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521