Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG788_RS17235 Genome accession   NZ_CP109040
Coordinates   3932583..3933263 (-) Length   226 a.a.
NCBI ID   WP_266758730.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3927583..3938263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS17225 (OG788_17255) - 3929879..3930841 (+) 963 WP_351548209.1 hypothetical protein -
  OG788_RS17230 (OG788_17260) clpX 3931136..3932422 (-) 1287 WP_266758728.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG788_RS17235 (OG788_17265) clpP 3932583..3933263 (-) 681 WP_266758730.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG788_RS17240 (OG788_17270) clpP 3933381..3933986 (-) 606 WP_328558268.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG788_RS17245 (OG788_17275) tig 3934452..3935825 (-) 1374 WP_406371810.1 trigger factor -
  OG788_RS17260 (OG788_17290) - 3936443..3936889 (-) 447 WP_406371812.1 NUDIX domain-containing protein -
  OG788_RS17265 (OG788_17295) - 3937088..3937282 (-) 195 WP_016435177.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24951.42 Da        Isoelectric Point: 4.6288

>NTDB_id=670061 OG788_RS17235 WP_266758730.1 3932583..3933263(-) (clpP) [Streptomyces sp. NBC_00647]
MNDFPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=670061 OG788_RS17235 WP_266758730.1 3932583..3933263(-) (clpP) [Streptomyces sp. NBC_00647]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATTTACGACACGATGCAGTT
CGTGAAGCCGGACATTCAGACGGTCTGCATGGGACAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCACTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGGCAGGTCTCGGAC
CTCGAGATCGCGGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGATCAGA
TCATCTCCACCCGGAAGATGAACAACTCCGCGGTCGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385