Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | GM3709_RS04400 | Genome accession | NZ_AP014821 |
| Coordinates | 1021011..1021376 (+) | Length | 121 a.a. |
| NCBI ID | WP_066121722.1 | Uniprot ID | - |
| Organism | Geminocystis sp. NIES-3709 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1016011..1026376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM3709_RS04380 (GM3709_913) | - | 1016276..1016554 (+) | 279 | WP_066116644.1 | DUF3288 family protein | - |
| GM3709_RS04385 (GM3709_914) | gatB | 1016651..1018135 (+) | 1485 | WP_066116646.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB | - |
| GM3709_RS04390 (GM3709_915) | - | 1018189..1018944 (-) | 756 | WP_066116648.1 | DUF2993 domain-containing protein | - |
| GM3709_RS04395 (GM3709_916) | hpnH | 1019520..1020533 (+) | 1014 | WP_066116649.1 | adenosyl-hopene transferase HpnH | - |
| GM3709_RS04400 (GM3709_917) | pilH | 1021011..1021376 (+) | 366 | WP_066121722.1 | response regulator transcription factor | Machinery gene |
| GM3709_RS04405 (GM3709_918) | - | 1021582..1022121 (+) | 540 | WP_173645699.1 | chemotaxis protein CheW | - |
| GM3709_RS04410 (GM3709_919) | pilJ | 1022178..1024907 (+) | 2730 | WP_066121727.1 | methyl-accepting chemotaxis protein | Machinery gene |
| GM3709_RS04415 (GM3709_920) | - | 1025073..1025837 (+) | 765 | WP_066116651.1 | MlaE family lipid ABC transporter permease subunit | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13437.88 Da Isoelectric Point: 7.7800
>NTDB_id=66940 GM3709_RS04400 WP_066121722.1 1021011..1021376(+) (pilH) [Geminocystis sp. NIES-3709]
MSTVLLVEDSTTTRKMISELLIKQGLKVEIATDGVEALEILPTISPDIVILDIVMPKMNGYEVCRNIKSNPKTKNVPVLI
CSSKGEDFDRYWGMKQGADAYIAKPFQPKELIATIKQLLKG
MSTVLLVEDSTTTRKMISELLIKQGLKVEIATDGVEALEILPTISPDIVILDIVMPKMNGYEVCRNIKSNPKTKNVPVLI
CSSKGEDFDRYWGMKQGADAYIAKPFQPKELIATIKQLLKG
Nucleotide
Download Length: 366 bp
>NTDB_id=66940 GM3709_RS04400 WP_066121722.1 1021011..1021376(+) (pilH) [Geminocystis sp. NIES-3709]
ATGAGTACAGTGTTGCTTGTCGAAGATAGTACAACGACAAGAAAAATGATTAGTGAACTATTAATTAAGCAAGGTTTAAA
GGTAGAAATAGCAACGGATGGAGTTGAAGCATTAGAAATATTGCCTACTATTAGCCCTGATATAGTTATCTTAGATATAG
TTATGCCCAAAATGAATGGGTATGAGGTGTGTCGCAATATTAAATCAAATCCTAAAACAAAAAATGTCCCCGTGTTGATT
TGTTCTTCCAAAGGAGAAGATTTCGATCGATATTGGGGAATGAAACAAGGAGCTGATGCTTATATCGCAAAACCCTTTCA
ACCAAAAGAACTAATTGCTACCATTAAACAATTGTTAAAAGGATAA
ATGAGTACAGTGTTGCTTGTCGAAGATAGTACAACGACAAGAAAAATGATTAGTGAACTATTAATTAAGCAAGGTTTAAA
GGTAGAAATAGCAACGGATGGAGTTGAAGCATTAGAAATATTGCCTACTATTAGCCCTGATATAGTTATCTTAGATATAG
TTATGCCCAAAATGAATGGGTATGAGGTGTGTCGCAATATTAAATCAAATCCTAAAACAAAAAATGTCCCCGTGTTGATT
TGTTCTTCCAAAGGAGAAGATTTCGATCGATATTGGGGAATGAAACAAGGAGCTGATGCTTATATCGCAAAACCCTTTCA
ACCAAAAGAACTAATTGCTACCATTAAACAATTGTTAAAAGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
72.5 |
99.174 |
0.719 |
| micA | Streptococcus pneumoniae Cp1015 |
40 |
99.174 |
0.397 |
| pilG | Acinetobacter baumannii strain A118 |
40.351 |
94.215 |
0.38 |
| scnR | Streptococcus mutans UA159 |
38.983 |
97.521 |
0.38 |
| chpA | Acinetobacter baumannii strain A118 |
38.793 |
95.868 |
0.372 |
| letA | Legionella pneumophila strain ERS1305867 |
35.714 |
100 |
0.372 |
| letA | Legionella pneumophila str. Paris |
35.714 |
100 |
0.372 |
| pilL-C | Synechocystis sp. PCC 6803 |
36.667 |
99.174 |
0.364 |