Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | IEQ11_RS19580 | Genome accession | NZ_CP094357 |
| Coordinates | 4776989..4778245 (+) | Length | 418 a.a. |
| NCBI ID | WP_191822052.1 | Uniprot ID | - |
| Organism | Lysobacter capsici strain VKM B-2533 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4771989..4783245
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEQ11_RS19560 (IEQ11_19560) | - | 4772687..4773547 (-) | 861 | WP_191822048.1 | hypothetical protein | - |
| IEQ11_RS19565 (IEQ11_19565) | - | 4773537..4774238 (-) | 702 | WP_191822049.1 | class I SAM-dependent methyltransferase | - |
| IEQ11_RS19570 (IEQ11_19570) | - | 4774229..4775122 (-) | 894 | WP_191822050.1 | glycosyltransferase family 2 protein | - |
| IEQ11_RS19575 (IEQ11_19575) | pilB | 4775258..4776985 (+) | 1728 | WP_191822051.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IEQ11_RS19580 (IEQ11_19580) | pilC | 4776989..4778245 (+) | 1257 | WP_191822052.1 | type II secretion system F family protein | Machinery gene |
| IEQ11_RS19585 (IEQ11_19585) | - | 4778267..4779154 (+) | 888 | WP_191822053.1 | prepilin peptidase | - |
| IEQ11_RS19590 (IEQ11_19590) | coaE | 4779158..4779778 (+) | 621 | WP_191822054.1 | dephospho-CoA kinase | - |
| IEQ11_RS19595 (IEQ11_19595) | - | 4779929..4780903 (-) | 975 | WP_247024614.1 | Nudix family hydrolase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45429.75 Da Isoelectric Point: 10.3304
>NTDB_id=669224 IEQ11_RS19580 WP_191822052.1 4776989..4778245(+) (pilC) [Lysobacter capsici strain VKM B-2533]
MSATRSATKTPTPVRRANPLDVFVWQGTDKRGITMKGEQAAKNANLLRAELRRQGITPTVVKPKGKSLFGAAGKRITPGE
IAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNTVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGVLE
TVLDTVASYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPTFTLMVIGMSDFMIKWWWA
VLILVVGAAVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEK
AVYRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMVILGVIV
GGMVIAMYLPIFKLAATI
MSATRSATKTPTPVRRANPLDVFVWQGTDKRGITMKGEQAAKNANLLRAELRRQGITPTVVKPKGKSLFGAAGKRITPGE
IAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNTVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGVLE
TVLDTVASYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPTFTLMVIGMSDFMIKWWWA
VLILVVGAAVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEK
AVYRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMVILGVIV
GGMVIAMYLPIFKLAATI
Nucleotide
Download Length: 1257 bp
>NTDB_id=669224 IEQ11_RS19580 WP_191822052.1 4776989..4778245(+) (pilC) [Lysobacter capsici strain VKM B-2533]
ATGTCCGCGACTCGATCCGCCACCAAGACCCCCACCCCGGTACGCCGCGCCAATCCCCTGGACGTCTTCGTCTGGCAAGG
CACCGACAAGCGCGGCATCACGATGAAGGGCGAGCAGGCGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGTCGCC
AGGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGTCGCTGTTCGGGGCCGCCGGCAAGCGCATCACCCCCGGTGAA
ATCGCCATCTTCAGCCGTCAGATCGCGACGATGATGAAGTCGGGCGTGCCGATCGTGACCTCGCTGGAGATCATCGGCGA
AGGGCACAAGAACCCGCGCATGAAGAAGCTGCTGAACACCGTGCGCGCCGACCTGGAAAGCGGCTCGTCGCTGCACGAGG
CCATGTCCAAGCATCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCCGGTGTGCTCGAG
ACCGTGCTCGACACGGTCGCCAGCTACAAGGAAAACATCGAAACCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCACGGTCGTGGCCGTGGCGATCCTGGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCGCAGTTCCAGGCCACCTTCA
AGAGCTTCGGCGCCGACCTGCCGACCTTCACCTTGATGGTGATCGGCATGAGCGACTTCATGATCAAGTGGTGGTGGGCC
GTGCTGATCCTGGTCGTCGGCGCCGCGGTCGCCTTCATCATGGCCAAGAACCGCTCGCCCGCCTTCGCCCACTTCCTCGA
CCGGGCGATGCTCAAGATCCCGGTGGTCGGGCAGATCCTGCACAACGCGGCGATCGCCCGCTTCGCCCGTACCCTGGCGG
TGACCTTCCGCGCCGGCGTGCCGCTGGTCGAGGCGCTCGACACGGTCGCCGGCGCGACCGGCAACGTGGTCTACGAAAAG
GCGGTCTACCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGGTGCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCGCCGAGTTCTACG
AGCAGGAAGTCAACAACGCGGTCGACGCGCTGTCGAGCCTGCTGGAGCCGCTGATCATGGTCATCCTCGGCGTGATCGTC
GGCGGCATGGTCATCGCCATGTACCTGCCGATCTTCAAACTTGCTGCGACCATCTGA
ATGTCCGCGACTCGATCCGCCACCAAGACCCCCACCCCGGTACGCCGCGCCAATCCCCTGGACGTCTTCGTCTGGCAAGG
CACCGACAAGCGCGGCATCACGATGAAGGGCGAGCAGGCGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGTCGCC
AGGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGTCGCTGTTCGGGGCCGCCGGCAAGCGCATCACCCCCGGTGAA
ATCGCCATCTTCAGCCGTCAGATCGCGACGATGATGAAGTCGGGCGTGCCGATCGTGACCTCGCTGGAGATCATCGGCGA
AGGGCACAAGAACCCGCGCATGAAGAAGCTGCTGAACACCGTGCGCGCCGACCTGGAAAGCGGCTCGTCGCTGCACGAGG
CCATGTCCAAGCATCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCCGGTGTGCTCGAG
ACCGTGCTCGACACGGTCGCCAGCTACAAGGAAAACATCGAAACCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCACGGTCGTGGCCGTGGCGATCCTGGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCGCAGTTCCAGGCCACCTTCA
AGAGCTTCGGCGCCGACCTGCCGACCTTCACCTTGATGGTGATCGGCATGAGCGACTTCATGATCAAGTGGTGGTGGGCC
GTGCTGATCCTGGTCGTCGGCGCCGCGGTCGCCTTCATCATGGCCAAGAACCGCTCGCCCGCCTTCGCCCACTTCCTCGA
CCGGGCGATGCTCAAGATCCCGGTGGTCGGGCAGATCCTGCACAACGCGGCGATCGCCCGCTTCGCCCGTACCCTGGCGG
TGACCTTCCGCGCCGGCGTGCCGCTGGTCGAGGCGCTCGACACGGTCGCCGGCGCGACCGGCAACGTGGTCTACGAAAAG
GCGGTCTACCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGGTGCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCGCCGAGTTCTACG
AGCAGGAAGTCAACAACGCGGTCGACGCGCTGTCGAGCCTGCTGGAGCCGCTGATCATGGTCATCCTCGGCGTGATCGTC
GGCGGCATGGTCATCGCCATGTACCTGCCGATCTTCAAACTTGCTGCGACCATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
56.675 |
94.976 |
0.538 |
| pilC | Legionella pneumophila strain ERS1305867 |
54.703 |
96.651 |
0.529 |
| pilC | Acinetobacter baylyi ADP1 |
51.97 |
97.129 |
0.505 |
| pilC | Acinetobacter baumannii D1279779 |
51.478 |
97.129 |
0.5 |
| pilG | Neisseria gonorrhoeae MS11 |
43.424 |
96.411 |
0.419 |
| pilG | Neisseria meningitidis 44/76-A |
42.928 |
96.411 |
0.414 |
| pilC | Vibrio campbellii strain DS40M4 |
40.796 |
96.172 |
0.392 |
| pilC | Vibrio cholerae strain A1552 |
40 |
95.694 |
0.383 |
| pilC | Thermus thermophilus HB27 |
36.967 |
100 |
0.373 |