Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MRY17_RS03795 Genome accession   NZ_CP094351
Coordinates   882437..883645 (-) Length   402 a.a.
NCBI ID   WP_279308382.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain YB-76     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 877437..888645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY17_RS03755 (MRY17_03755) - 877447..878745 (-) 1299 WP_181282728.1 NAD(P)/FAD-dependent oxidoreductase -
  MRY17_RS03760 (MRY17_03760) - 878806..878979 (-) 174 WP_065887994.1 DUF3094 family protein -
  MRY17_RS03765 (MRY17_03765) - 879033..879662 (-) 630 WP_181282727.1 DUF1780 domain-containing protein -
  MRY17_RS03770 (MRY17_03770) - 879792..880481 (+) 690 WP_243353317.1 energy-coupling factor ABC transporter permease -
  MRY17_RS03775 (MRY17_03775) - 880545..880760 (+) 216 WP_003171680.1 hypothetical protein -
  MRY17_RS03780 (MRY17_03780) yacG 880757..880957 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  MRY17_RS03785 (MRY17_03785) coaE 880954..881577 (-) 624 WP_181282724.1 dephospho-CoA kinase -
  MRY17_RS03790 (MRY17_03790) pilD 881574..882440 (-) 867 WP_279308381.1 A24 family peptidase Machinery gene
  MRY17_RS03795 (MRY17_03795) pilC 882437..883645 (-) 1209 WP_279308382.1 type II secretion system F family protein Machinery gene
  MRY17_RS03800 (MRY17_03800) - 883844..884257 (+) 414 WP_181282733.1 pilin -
  MRY17_RS03810 (MRY17_03810) - 884571..884876 (+) 306 WP_181282722.1 DUF6388 family protein -
  MRY17_RS03815 (MRY17_03815) nadC 884996..885844 (-) 849 WP_243353320.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MRY17_RS03820 (MRY17_03820) - 886088..888244 (+) 2157 WP_243353321.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43329.72 Da        Isoelectric Point: 9.7269

>NTDB_id=669186 MRY17_RS03795 WP_279308382.1 882437..883645(-) (pilC) [Pseudomonas orientalis strain YB-76]
MKDSSTIYAWQGINRKGHWVCGKIAARDLAQVNAQLREQGICPERVRRQSPGLPSLAAPILPADIALFTRQLATLLKAGI
PLLQAFDIISAGVENRTLRELVKGLKQHVAAGNSLTSTLRQYPRYFDDLYCHLIAAGEQAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPLAVLVVAGLVSAVLLIQVVPQFQNLFAGVDSQLPAFTLAVIALSDFLQQAWWMLALGLGTAFGGLRHAY
RGSAGFRYRLEAGLLKVPLAGKLLTKAAVARYARTLATTFAAGVPLVQALGSVAGAVGNGHFKQAIEHMRHDVSTGMQLN
QSMAANGLFPGMAIQMTAIGEESGTLDHMLEKVANHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=669186 MRY17_RS03795 WP_279308382.1 882437..883645(-) (pilC) [Pseudomonas orientalis strain YB-76]
ATGAAAGACAGCTCGACGATCTACGCCTGGCAGGGCATCAACCGCAAAGGCCACTGGGTGTGCGGAAAAATCGCGGCGCG
TGACCTTGCGCAAGTCAATGCACAACTGCGCGAACAAGGAATCTGCCCCGAGCGTGTGCGCAGGCAATCGCCAGGCCTGC
CAAGCCTGGCTGCGCCGATACTGCCGGCGGACATTGCCCTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCGGGTATC
CCGCTGCTGCAAGCCTTCGACATCATCAGCGCGGGCGTTGAAAACCGCACACTGCGCGAGCTGGTCAAGGGTCTGAAGCA
ACACGTCGCCGCCGGTAACAGCCTGACCAGCACGCTGCGCCAATATCCCCGTTACTTCGATGACCTGTACTGCCACTTGA
TTGCCGCCGGTGAACAGGCCGGTGCCCTGGAAACGCTGCTGGAGCGCGTGGCCATTCATCTGGAAAAAAGCCAGCGGCTC
AAAACCAGAATCAAAAAAGCCATGACCTACCCTCTTGCAGTGCTGGTGGTGGCCGGACTGGTCAGCGCAGTGTTGTTGAT
ACAAGTGGTGCCGCAGTTCCAGAACCTGTTCGCCGGAGTCGACAGCCAATTGCCCGCTTTTACCCTCGCGGTCATCGCCC
TTTCCGATTTTCTGCAACAGGCCTGGTGGATGCTGGCGCTGGGCCTGGGCACGGCCTTCGGCGGGCTGCGTCACGCCTAC
CGTGGCTCTGCGGGGTTTCGCTATCGACTGGAGGCGGGTTTGTTGAAAGTCCCCCTGGCAGGCAAACTGTTGACCAAAGC
TGCCGTCGCACGCTACGCCCGCACGCTTGCAACCACCTTTGCGGCAGGTGTCCCGCTGGTGCAGGCGCTGGGCTCAGTGG
CCGGCGCTGTCGGCAATGGCCATTTCAAACAGGCAATCGAACATATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCCATGGCCGCCAACGGCCTGTTTCCAGGCATGGCGATCCAGATGACGGCGATCGGCGAAGAGTCCGGCACCCTGGA
CCACATGCTGGAAAAAGTTGCGAACCATTACGAGGCCGACGTAGAGACCCTCGTCGATAACCTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTGCTGGGGAGCATCGTCGGCGCGCTGGTGATTGCAATGTACCTGCCGGTATTTCAACTGGGTTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.035

99.005

0.565
  pilC Acinetobacter baylyi ADP1

51.515

98.507

0.507
  pilC Acinetobacter baumannii D1279779

49.114

98.259

0.483
  pilC Legionella pneumophila strain ERS1305867

48.354

98.259

0.475
  pilG Neisseria gonorrhoeae MS11

41.207

94.776

0.391
  pilC Vibrio cholerae strain A1552

38.084

100

0.386
  pilG Neisseria meningitidis 44/76-A

40.682

94.776

0.386
  pilC Thermus thermophilus HB27

37.845

99.254

0.376
  pilC Vibrio campbellii strain DS40M4

38.071

98.01

0.373

Multiple sequence alignment