Detailed information NTG0669185

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MRY17_RS03790
• Genome accession: NZ_CP094351
• Coordinates: 881574..882440 (-)
• Length: 288 a.a.
• NCBI ID: WP_279308381.1
• Uniprot ID: -
• Organism: Pseudomonas orientalis strain YB-76
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 876574..887440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MRY17_RS03755 (MRY17_03755)	-	877447..878745 (-)	1299	WP_181282728.1	NAD(P)/FAD-dependent oxidoreductase	-
MRY17_RS03760 (MRY17_03760)	-	878806..878979 (-)	174	WP_065887994.1	DUF3094 family protein	-
MRY17_RS03765 (MRY17_03765)	-	879033..879662 (-)	630	WP_181282727.1	DUF1780 domain-containing protein	-
MRY17_RS03770 (MRY17_03770)	-	879792..880481 (+)	690	WP_243353317.1	energy-coupling factor ABC transporter permease	-
MRY17_RS03775 (MRY17_03775)	-	880545..880760 (+)	216	WP_003171680.1	hypothetical protein	-
MRY17_RS03780 (MRY17_03780)	yacG	880757..880957 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
MRY17_RS03785 (MRY17_03785)	coaE	880954..881577 (-)	624	WP_181282724.1	dephospho-CoA kinase	-
MRY17_RS03790 (MRY17_03790)	pilD	881574..882440 (-)	867	WP_279308381.1	A24 family peptidase	Machinery gene
MRY17_RS03795 (MRY17_03795)	pilC	882437..883645 (-)	1209	WP_279308382.1	type II secretion system F family protein	Machinery gene
MRY17_RS03800 (MRY17_03800)	-	883844..884257 (+)	414	WP_181282733.1	pilin	-
MRY17_RS03810 (MRY17_03810)	-	884571..884876 (+)	306	WP_181282722.1	DUF6388 family protein	-
MRY17_RS03815 (MRY17_03815)	nadC	884996..885844 (-)	849	WP_243353320.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31617.00 Da
• Isoelectric Point: 7.9195

>NTDB_id=669185 MRY17_RS03790 WP_279308381.1 881574..882440(-) (pilD) [Pseudomonas orientalis strain YB-76]
MSALLGEQPWALVGMALVLGLIIGSFLNVLVWRLPKMLEREWRAQAHEILGLPAAPAEPVYNLMRPNSCCPHCDQPIRPW
ENIPLVSYLMLKGRCAHCRAAISARYPFTELACALISAIVAWHFGFGWQAGAVMLLSWGLLGMSLIDVDHQLLPDVMVLP
LLWLGLVLNSLGLLATLPDALWGAVLGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGLF
AGLLLMRGRKTPMSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=669185 MRY17_RS03790 WP_279308381.1 881574..882440(-) (pilD) [Pseudomonas orientalis strain YB-76]
TTGAGCGCGTTGCTGGGCGAGCAGCCCTGGGCACTTGTCGGCATGGCGCTGGTGCTGGGCCTGATCATTGGCAGCTTCCT
CAATGTGCTGGTATGGCGTCTGCCCAAAATGCTCGAACGCGAATGGCGCGCCCAGGCCCATGAGATCCTCGGCCTGCCCG
CCGCGCCAGCGGAGCCGGTCTATAACCTGATGCGCCCGAATTCGTGCTGTCCACACTGCGACCAGCCGATTCGCCCCTGG
GAGAATATCCCCCTGGTCAGCTACCTGATGCTCAAGGGACGTTGCGCCCATTGCCGTGCAGCGATCAGCGCGCGCTACCC
CTTCACTGAACTGGCCTGTGCGCTGATATCCGCCATCGTTGCCTGGCACTTCGGCTTTGGCTGGCAGGCCGGCGCAGTGA
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGATGTGGATCACCAACTGCTGCCGGATGTCATGGTGCTGCCG
CTGCTGTGGCTGGGGCTTGTCCTCAATAGCCTGGGCCTGCTAGCGACATTGCCCGATGCGTTATGGGGCGCGGTGCTCGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGACTTCAAGC
TATTGGCGCTGCTGGGTGCCTGGGGCGGCTGGCAGATACTGCCGATGACGCTGCTGATGGCGTCACTGCTCGGCTTGTTT
GCCGGGCTGCTGCTGATGCGCGGGCGCAAGACGCCTATGTCGGCACCGATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.158	96.528	0.503
pilD	Vibrio campbellii strain DS40M4	47.687	97.569	0.465
pilD	Neisseria gonorrhoeae MS11	47.794	94.444	0.451
pilD	Acinetobacter baumannii D1279779	45.818	95.486	0.437
pilD	Acinetobacter nosocomialis M2	45.818	95.486	0.437