Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MOW14_RS12760 Genome accession   NZ_CP094258
Coordinates   2660042..2662183 (-) Length   713 a.a.
NCBI ID   WP_180006629.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2655042..2667183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW14_RS12745 (MOW14_12745) - 2657509..2658345 (-) 837 WP_104483915.1 hypothetical protein -
  MOW14_RS12750 (MOW14_12750) aroB 2658358..2659440 (-) 1083 WP_075167859.1 3-dehydroquinate synthase -
  MOW14_RS12755 (MOW14_12755) aroK 2659463..2660005 (-) 543 WP_075167858.1 shikimate kinase AroK -
  MOW14_RS12760 (MOW14_12760) pilQ 2660042..2662183 (-) 2142 WP_180006629.1 type IV pilus secretin PilQ family protein Machinery gene
  MOW14_RS12765 (MOW14_12765) pilP 2662244..2662771 (-) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  MOW14_RS12770 (MOW14_12770) pilO 2662771..2663490 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  MOW14_RS12775 (MOW14_12775) pilN 2663487..2664122 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  MOW14_RS12780 (MOW14_12780) pilM 2664122..2665180 (-) 1059 WP_104505685.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 77088.23 Da        Isoelectric Point: 5.0549

>NTDB_id=668438 MOW14_RS12760 WP_180006629.1 2660042..2662183(-) (pilQ) [Acinetobacter indicus strain BDT201]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLVLDFDKAQQTLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAVTPVTVQQTAQGVSNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITEGKNASNSRSGTSNSTANTDPLGD
SVGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNH
LLVGGSDTTLWNLREPEFDDERGGYTYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTP
KVLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKN
SINTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=668438 MOW14_RS12760 WP_180006629.1 2660042..2662183(-) (pilQ) [Acinetobacter indicus strain BDT201]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGACCTTAAAACAGGCCAGCATT
CCGGTTGCGACTCGGGAAGCCAGCTCGGTTGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTTGAAGGCAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGTAACGCCAG
TGACGGTACAGCAGACGGCTCAAGGTGTATCGAATATCGGCTTTCAGCGTGGTGCAGAAGGGGAAGGTCAGGTAGTAATT
GACCTGGCAGGCAGCAATACCCCGGTCGATGTGCAACAGCAAGGCAGTAAAATTATTGTCCGTACTTTGGGCAATAAAAT
TCCTGCGCATCTGGCACGCCGTTTAAATGTCAATGATTTTGCCACGCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GCAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATTAGC
CTGAAACGTCCTGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGTAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACCAAAAATCTGGAT
AAACGCCGTAATGGCAATGTGATCTGGATTGCACCCGTCGCAGAACTAATCAAGGCTGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGTTGCAAACCGAATATATTCAGTTAAATTATGCCAAGGCTGCTGATATTGAAAAAC
TGATTACCGAAGGTAAAAATGCGTCTAATTCCCGTAGTGGCACAAGTAACAGTACAGCCAATACTGATCCACTCGGTGAT
AGTGTCGGTAGTCTGCTCAGCCCTCGCGGTACGGTGTCAGTTGATCCACGAACCAACACCCTGATTATTAATGATACCGC
GCAAAAGATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTATCGGTGAAACAGGTGATGATTGAAGCCCGTATTG
TGCGTGCCACCACCGACTTTACTAAAGAGATGGGGGTCAAGTGGGGTATCCTGTCACAGGGTATCACGAATAATAACCAT
CTTTTGGTTGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCGGAATTTGACGATGAGCGTGGTGGTTATACCTA
TGAAATTGAACGTCCACAAAACTTGAATGTCGATTTGGGGGTCACCAGCCCAGGTGCGAGCCGGATTGCTTTTGGTCTCA
TCAGCCTGTCTGACTTTATGCTGGATTTAGAACTGTCTGCCCTACAAGCTGATGGTTATGGTGAAGTAATTTCGACCCCG
AAAGTACTGACTGCTGATAAGCAACAGGCCAAAGTGGCTTCAGGTACGCAGATTCCATATCAGTCTGCTGAAGGAGGCGG
TGTCAATGCGGTATCCACCACAGAGTTTATTGATGCAACTTTAAGTCTGGATGTTACGCCAAGCATTACCCCGGATGGTA
AAGTGCAGATGAACCTGAATATCACCAGTGATAGTCCGGGAGCACCAACGCCGACCGGTCAGCTGACGATTAACAAAAAC
TCGATCAATACCAATGTACTGGTCGATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCA
GCAAACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAAC
GTGAGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(547-705)

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-446)

AMIN domain (AMIN)

(40-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.87

100

0.778
  pilQ Acinetobacter baumannii strain A118

76.731

100

0.777
  comQ Acinetobacter baylyi ADP1

74.406

100

0.746
  pilQ Pseudomonas aeruginosa PAK

40.171

98.457

0.396
  pilQ Legionella pneumophila strain Lp02

38.268

100

0.384
  pilQ Legionella pneumophila strain ERS1305867

38.268

100

0.384

Multiple sequence alignment