Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIB37_RS13545 Genome accession   NZ_CP108882
Coordinates   2972245..2972850 (-) Length   201 a.a.
NCBI ID   WP_199273062.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00820     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2967245..2977850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIB37_RS13530 (OIB37_13550) - 2968974..2969981 (+) 1008 WP_330457832.1 hypothetical protein -
  OIB37_RS13535 (OIB37_13555) clpX 2970054..2971340 (-) 1287 WP_330457833.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIB37_RS13540 (OIB37_13560) clpP 2971509..2972174 (-) 666 WP_330461840.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIB37_RS13545 (OIB37_13565) clpP 2972245..2972850 (-) 606 WP_199273062.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIB37_RS13550 (OIB37_13570) tig 2973236..2974609 (-) 1374 WP_330457834.1 trigger factor -
  OIB37_RS13565 (OIB37_13585) - 2975371..2975565 (-) 195 WP_330457835.1 hypothetical protein -
  OIB37_RS13570 (OIB37_13590) - 2976005..2977195 (+) 1191 WP_330457836.1 acyltransferase family protein -
  OIB37_RS13575 (OIB37_13595) - 2977229..2977684 (-) 456 WP_330457837.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21245.12 Da        Isoelectric Point: 4.5383

>NTDB_id=668193 OIB37_RS13545 WP_199273062.1 2972245..2972850(-) (clpP) [Streptomyces sp. NBC_00820]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQQVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPHTDIMMHQGSAGLGGTVSDIKIQAQYLLRTKKTMSELTALHSGQTVE
TIVRDGDRDRWFTPEEAKEYGLIDEIITHASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=668193 OIB37_RS13545 WP_199273062.1 2972245..2972850(-) (clpP) [Streptomyces sp. NBC_00820]
ATGCCCTCAGCCGCCGGCGAGCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGTATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTCACGATCGGCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACCGGCGGTACCGCCGG
CAAGCGCTTCGCCCTGCCGCACACGGACATCATGATGCACCAGGGCTCCGCGGGCCTGGGCGGTACGGTCTCGGACATCA
AGATCCAGGCCCAGTACCTGCTGCGTACCAAGAAGACCATGTCCGAGCTGACCGCGCTGCACTCCGGCCAGACCGTCGAG
ACGATCGTCCGCGACGGCGACCGCGACCGCTGGTTCACCCCGGAAGAGGCCAAGGAGTACGGTCTCATTGACGAGATCAT
CACGCACGCCTCGGGTGTTCCGGGAGGCGGCGGCACCGGTGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.27

92.04

0.463
  clpP Lactococcus lactis subsp. cremoris KW2

48.936

93.532

0.458
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

48.404

93.532

0.453
  clpP Streptococcus pneumoniae TIGR4

49.718

88.06

0.438
  clpP Streptococcus pneumoniae Rx1

49.718

88.06

0.438
  clpP Streptococcus pneumoniae D39

49.718

88.06

0.438
  clpP Streptococcus pneumoniae R6

49.718

88.06

0.438
  clpP Streptococcus thermophilus LMD-9

50.286

87.065

0.438
  clpP Streptococcus thermophilus LMG 18311

50.286

87.065

0.438
  clpP Streptococcus mutans UA159

49.714

87.065

0.433
  clpP Streptococcus pyogenes JRS4

49.711

86.07

0.428
  clpP Streptococcus pyogenes MGAS315

49.711

86.07

0.428