Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIB37_RS13540 Genome accession   NZ_CP108882
Coordinates   2971509..2972174 (-) Length   221 a.a.
NCBI ID   WP_330461840.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00820     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2966509..2977174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIB37_RS13530 (OIB37_13550) - 2968974..2969981 (+) 1008 WP_330457832.1 hypothetical protein -
  OIB37_RS13535 (OIB37_13555) clpX 2970054..2971340 (-) 1287 WP_330457833.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIB37_RS13540 (OIB37_13560) clpP 2971509..2972174 (-) 666 WP_330461840.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIB37_RS13545 (OIB37_13565) clpP 2972245..2972850 (-) 606 WP_199273062.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIB37_RS13550 (OIB37_13570) tig 2973236..2974609 (-) 1374 WP_330457834.1 trigger factor -
  OIB37_RS13565 (OIB37_13585) - 2975371..2975565 (-) 195 WP_330457835.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24569.02 Da        Isoelectric Point: 4.6678

>NTDB_id=668192 OIB37_RS13540 WP_330461840.1 2971509..2972174(-) (clpP) [Streptomyces sp. NBC_00820]
MSNFPGAASGLYEGPRPDSRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
IYINSPGGDMTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNSRVLIHQPAGSTGRGQLSDLEIIA
KEFTRMREQLEDMLAKHTNRPLEKIREDIERDKILTAEEALEYGIVDQIVSTRKMNNAEVR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=668192 OIB37_RS13540 WP_330461840.1 2971509..2972174(-) (clpP) [Streptomyces sp. NBC_00820]
ATGAGCAACTTCCCCGGCGCCGCCAGCGGCCTGTACGAAGGGCCCCGCCCCGACAGCCGCTACGTCATCCCGCGCTTCGT
CGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTGGGCGTCC
AGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCG
ATCTACATCAACAGCCCCGGTGGTGACATGACGGCCCTCACGGCCATCTACGACACCATGCAGTTCGTGAAGCCGGACAT
CCAGACGGTGTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTCGCCGCCGGCACCCCGGGCAAGCGCATGGCGC
TCCCGAACTCCCGCGTGCTGATCCACCAGCCGGCCGGCTCCACCGGCCGCGGTCAGCTCTCCGACCTGGAGATCATCGCC
AAGGAGTTCACCCGGATGCGCGAGCAGCTGGAGGACATGCTGGCCAAGCACACCAACCGGCCGCTCGAGAAGATCCGCGA
GGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTGGAGTACGGCATCGTCGACCAGATCGTCTCCACCCGGA
AGATGAACAACGCCGAGGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

85.973

0.452
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

85.068

0.434
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

88.688

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

88.688

0.389
  clpP Streptococcus thermophilus LMG 18311

44.103

88.235

0.389
  clpP Streptococcus thermophilus LMD-9

44.103

88.235

0.389
  clpP Streptococcus mutans UA159

43.077

88.235

0.38
  clpP Streptococcus pneumoniae D39

42.857

88.688

0.38
  clpP Streptococcus pneumoniae R6

42.857

88.688

0.38
  clpP Streptococcus pneumoniae TIGR4

42.857

88.688

0.38
  clpP Streptococcus pneumoniae Rx1

42.857

88.688

0.38
  clpP Streptococcus pyogenes JRS4

42.564

88.235

0.376
  clpP Streptococcus pyogenes MGAS315

42.564

88.235

0.376