Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MP387_RS07915 Genome accession   NZ_CP094226
Coordinates   1630664..1631920 (-) Length   418 a.a.
NCBI ID   WP_242746142.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625664..1636920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS07890 (MP387_07890) - 1626115..1626831 (-) 717 WP_000532894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  MP387_RS07895 (MP387_07895) - 1626928..1628298 (-) 1371 WP_242746137.1 MATE family efflux transporter -
  MP387_RS07900 (MP387_07900) - 1628408..1628962 (+) 555 WP_242746140.1 GNAT family N-acetyltransferase -
  MP387_RS07905 (MP387_07905) - 1629094..1629288 (-) 195 WP_000415531.1 PspC domain-containing protein -
  MP387_RS07910 (MP387_07910) recA 1629458..1630609 (-) 1152 WP_001085517.1 recombinase RecA Machinery gene
  MP387_RS07915 (MP387_07915) cinA 1630664..1631920 (-) 1257 WP_242746142.1 competence/damage-inducible protein A Machinery gene
  MP387_RS07920 (MP387_07920) - 1631993..1633033 (-) 1041 WP_242746144.1 LCP family protein -
  MP387_RS07925 (MP387_07925) - 1633038..1633559 (-) 522 WP_242746146.1 GNAT family N-acetyltransferase -
  MP387_RS07930 (MP387_07930) tsaE 1633549..1633992 (-) 444 WP_061428323.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  MP387_RS07935 (MP387_07935) comM 1634076..1634699 (-) 624 WP_242746148.1 hypothetical protein Regulator
  MP387_RS07940 (MP387_07940) ndk 1634834..1635253 (-) 420 WP_049489472.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45180.52 Da        Isoelectric Point: 4.7824

>NTDB_id=668125 MP387_RS07915 WP_242746142.1 1630664..1631920(-) (cinA) [Streptococcus oralis strain 1648]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSNLVILTGGLGPTEDDLTKQT
LAKFLGKDLVFDPQAQEKLDIFFDHRPDYARTPNNERQAQIVEGATPLPNETGLAVGGVSEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGTKLYSRVLRFFGIGESQLVTILADLIDHQTDPTLAPYAKTGEVTLRLSTKAVSQEKADQALDILENQI
LSRQTFEGISLRDICYGYGEETSLASVVVEELKKRQKSITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKML
DISEQELKEHGVVSEFTARKMAEQARLKTLSDYGVSLTGVAGPDSLEGHPAGTVFIGLAHAKGTEVIKANIAGRSRADVR
QIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=668125 MP387_RS07915 WP_242746142.1 1630664..1631920(-) (cinA) [Streptococcus oralis strain 1648]
ATGAAAGCAGAAATTATTGCTGTCGGAACAGAAATTTTAACGGGGCAGATTGTCAATACCAATGCTCAGTTTTTATCAGA
GAAACTAGCCGAAATCGGGGTAGATGTCTACTTCCAAACAGCTGTTGGAGATAATGAAGCTCGTCTTTTGTCCTTGCTTG
AGATTGCGAGTCAACGTAGTAATCTTGTGATTTTGACAGGGGGCTTGGGACCAACTGAGGATGATTTGACCAAACAAACT
CTGGCAAAATTTTTAGGAAAAGATCTGGTGTTTGACCCTCAAGCACAAGAGAAACTGGATATTTTCTTTGATCATAGACC
TGACTATGCTCGGACACCGAATAATGAGCGTCAAGCCCAAATTGTAGAAGGGGCGACTCCACTGCCAAATGAGACAGGTT
TAGCAGTAGGAGGGGTTTCGGAAGTGGATGGCGTGACCTACGTGGTCCTTCCAGGACCACCTAGTGAATTGAAACCTATG
GTCTTAAATCAACTCTTGCCCAAGCTGATGACAGGCACCAAGTTATACTCACGAGTGCTCCGTTTCTTTGGAATTGGGGA
GAGTCAGTTGGTGACCATTTTGGCGGATTTGATTGACCATCAAACCGATCCGACTTTGGCGCCGTATGCCAAGACGGGAG
AAGTGACCTTGCGCTTGTCTACAAAAGCAGTCAGTCAAGAAAAGGCTGATCAAGCACTGGATATCTTAGAAAATCAAATC
TTGAGTCGCCAAACTTTCGAGGGAATTTCTCTACGAGACATCTGTTATGGATATGGGGAAGAAACCAGTCTCGCAAGTGT
CGTTGTAGAAGAGCTAAAGAAGAGACAGAAAAGCATTACTGCGGCAGAAAGCTTGACGGCAGGTCTTTTTCAAGCGACAT
TAGCAGACTTTTCGGGCGTTTCAGCAATCTTTAATGGCGGTTTTGTCACTTACAGCCTAGAAGAAAAGTCCAAGATGTTG
GATATTTCCGAGCAAGAGCTAAAAGAGCACGGGGTCGTTTCTGAGTTTACGGCTCGAAAAATGGCAGAGCAGGCTCGACT
CAAGACTCTGTCTGACTACGGAGTTAGTTTGACGGGTGTGGCAGGACCAGATAGCTTAGAGGGGCATCCAGCTGGTACAG
TTTTTATTGGACTGGCACATGCAAAAGGGACAGAGGTGATCAAGGCTAATATCGCAGGACGGAGTCGAGCAGATGTTCGA
CAGATTGCGGTCATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

89.474

100

0.895
  cinA Streptococcus pneumoniae TIGR4

89.234

100

0.892
  cinA Streptococcus pneumoniae R6

88.995

100

0.89
  cinA Streptococcus pneumoniae Rx1

88.995

100

0.89
  cinA Streptococcus pneumoniae D39

88.756

100

0.888
  cinA Streptococcus mitis NCTC 12261

88.517

100

0.885
  cinA Streptococcus mutans UA159

70.096

100

0.701
  cinA Streptococcus suis isolate S10

54.808

99.522

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.455

Multiple sequence alignment