Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG705_RS10960 Genome accession   NZ_CP108857
Coordinates   2501776..2502459 (-) Length   227 a.a.
NCBI ID   WP_277993009.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00838     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2496776..2507459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG705_RS10950 (OG705_10975) - 2499285..2500253 (+) 969 WP_405819977.1 hypothetical protein -
  OG705_RS10955 (OG705_10980) clpX 2500329..2501621 (-) 1293 WP_078077342.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG705_RS10960 (OG705_10985) clpP 2501776..2502459 (-) 684 WP_277993009.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG705_RS10965 (OG705_10990) clpP 2502513..2503118 (-) 606 WP_031231653.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG705_RS10970 (OG705_10995) tig 2503412..2504839 (-) 1428 WP_242570261.1 trigger factor -
  OG705_RS10985 (OG705_11010) - 2505418..2505612 (-) 195 WP_147875291.1 hypothetical protein -
  OG705_RS10990 (OG705_11015) - 2506071..2507282 (+) 1212 WP_405819980.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24695.07 Da        Isoelectric Point: 4.6814

>NTDB_id=667702 OG705_RS10960 WP_277993009.1 2501776..2502459(-) (clpP) [Streptomyces sp. NBC_00838]
MVNTHMSNYPGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTAGKRLALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRAQLEEMLAKHSTTPIEKVRDDIERDKILTAEDALAYGLVDQIVSTRKTTAAAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=667702 OG705_RS10960 WP_277993009.1 2501776..2502459(-) (clpP) [Streptomyces sp. NBC_00838]
ATGGTGAACACCCACATGAGCAACTACCCCGGCGCCTCTGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
TGTCGTCCCGCGCTTCGTGGAGCGCACGTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCCATGGAC
CCCGACCGTGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGATGACGGCCCTCACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGACAGGCCGCCTCCGCGGCGGCGGTCCTGCTCGCGGCCGGCACGG
CGGGCAAGCGCCTGGCCCTGCCGAACGCGCGCGTCCTGATCCACCAGCCGTCCAGCCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACGACGCC
GATCGAGAAGGTCCGCGACGACATCGAGCGGGACAAGATCCTGACCGCCGAGGACGCTCTGGCGTACGGTCTGGTCGACC
AGATCGTCTCGACCCGTAAGACGACGGCGGCGGCAGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.34

82.819

0.392
  clpP Streptococcus thermophilus LMD-9

45.361

85.463

0.388
  clpP Streptococcus thermophilus LMG 18311

45.361

85.463

0.388
  clpP Streptococcus pneumoniae R6

44.56

85.022

0.379
  clpP Streptococcus pneumoniae D39

44.56

85.022

0.379
  clpP Streptococcus pneumoniae TIGR4

44.56

85.022

0.379
  clpP Streptococcus pneumoniae Rx1

44.56

85.022

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus mutans UA159

44.737

83.7

0.374
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

84.141

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

84.141

0.366

Multiple sequence alignment