Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG705_RS10965 Genome accession   NZ_CP108857
Coordinates   2502513..2503118 (-) Length   201 a.a.
NCBI ID   WP_031231653.1    Uniprot ID   A0ABZ2AFN1
Organism   Streptomyces sp. NBC_00838     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2497513..2508118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG705_RS10950 (OG705_10975) - 2499285..2500253 (+) 969 WP_405819977.1 hypothetical protein -
  OG705_RS10955 (OG705_10980) clpX 2500329..2501621 (-) 1293 WP_078077342.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG705_RS10960 (OG705_10985) clpP 2501776..2502459 (-) 684 WP_277993009.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG705_RS10965 (OG705_10990) clpP 2502513..2503118 (-) 606 WP_031231653.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG705_RS10970 (OG705_10995) tig 2503412..2504839 (-) 1428 WP_242570261.1 trigger factor -
  OG705_RS10985 (OG705_11010) - 2505418..2505612 (-) 195 WP_147875291.1 hypothetical protein -
  OG705_RS10990 (OG705_11015) - 2506071..2507282 (+) 1212 WP_405819980.1 acyltransferase family protein -
  OG705_RS10995 (OG705_11020) - 2507259..2507708 (-) 450 WP_242574310.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21126.92 Da        Isoelectric Point: 4.3926

>NTDB_id=667703 OG705_RS10965 WP_031231653.1 2502513..2503118(-) (clpP) [Streptomyces sp. NBC_00838]
MPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAEQLLRTKKRMAEITARHTGQTEE
TIIRDGDRDRWFTAEEAVSYGIIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=667703 OG705_RS10965 WP_031231653.1 2502513..2503118(-) (clpP) [Streptomyces sp. NBC_00838]
ATGCCTTACGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCGGTGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTTCTCCTCGCGGCCGAGCCCG
AGAAGGACATCTACCTCTACATCAACAGCCCCGGTGGTTCCGTCACGGCGGGCATGGCGGTCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTGACCATCGGCATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTGACCGGCGGCACCGCCGG
CAAGCGCTTCGCGCTGCCCAACACCGACATCCTCATGCACCAGGGCTCCGCGGGCCTCGGCGGCACCGCCTCCGACATCA
AGATCCAGGCCGAGCAGCTGCTCCGTACGAAGAAGCGCATGGCCGAGATCACCGCGCGCCACACGGGTCAGACCGAGGAG
ACCATCATCCGCGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAGGCCGTGTCCTACGGCATCATCGACGAGATCAT
CTCCGCTGCTTCGGGTGTTCCGGGCGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.596

93.532

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.262

95.025

0.478
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.064

93.532

0.478
  clpP Bacillus subtilis subsp. subtilis str. 168

55.814

85.572

0.478
  clpP Streptococcus mutans UA159

53.179

86.07

0.458
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

49.718

88.06

0.438
  clpP Streptococcus pneumoniae D39

49.718

88.06

0.438
  clpP Streptococcus pneumoniae R6

49.718

88.06

0.438
  clpP Streptococcus pneumoniae TIGR4

49.718

88.06

0.438
  clpP Streptococcus thermophilus LMG 18311

50.575

86.567

0.438
  clpP Streptococcus thermophilus LMD-9

50.575

86.567

0.438

Multiple sequence alignment