Detailed information NTG0667705

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF98_RS00730
• Genome accession: NZ_CP094153
• Coordinates: 150605..151570 (+)
• Length: 321 a.a.
• NCBI ID: WP_245049442.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe010
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145605..156570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF98_RS00700 (MPF98_00700)	panD	147012..147362 (+)	351	WP_245049438.1	aspartate 1-decarboxylase	-
MPF98_RS00705 (MPF98_00705)	-	147373..147666 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPF98_RS00710 (MPF98_00710)	-	147666..148661 (+)	996	WP_245049992.1	PDZ domain-containing protein	-
MPF98_RS00715 (MPF98_00715)	comB6	148669..149724 (+)	1056	WP_245049440.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF98_RS00720 (MPF98_00720)	comB7	149740..149865 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPF98_RS00725 (MPF98_00725)	comB8	149862..150605 (+)	744	WP_060760673.1	virB8 family protein	Machinery gene
MPF98_RS00730 (MPF98_00730)	comB9	150605..151570 (+)	966	WP_245049442.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF98_RS00735 (MPF98_00735)	comB10	151563..152699 (+)	1137	WP_245049444.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF98_RS00740 (MPF98_00740)	-	152769..154181 (+)	1413	WP_245049446.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF98_RS00745 (MPF98_00745)	gmd	154195..155340 (+)	1146	WP_017283482.1	GDP-mannose 4,6-dehydratase	-
MPF98_RS00750 (MPF98_00750)	-	155333..156265 (+)	933	WP_245049448.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36853.45 Da
• Isoelectric Point: 9.5584

>NTDB_id=667705 MPF98_RS00730 WP_245049442.1 150605..151570(+) (comB9) [Helicobacter pylori strain Hpfe010]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPKEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667705 MPF98_RS00730 WP_245049442.1 150605..151570(+) (comB9) [Helicobacter pylori strain Hpfe010]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTAAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATTCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931