Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPF98_RS00725 Genome accession   NZ_CP094153
Coordinates   149862..150605 (+) Length   247 a.a.
NCBI ID   WP_060760673.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144862..155605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF98_RS00700 (MPF98_00700) panD 147012..147362 (+) 351 WP_245049438.1 aspartate 1-decarboxylase -
  MPF98_RS00705 (MPF98_00705) - 147373..147666 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPF98_RS00710 (MPF98_00710) - 147666..148661 (+) 996 WP_245049992.1 PDZ domain-containing protein -
  MPF98_RS00715 (MPF98_00715) comB6 148669..149724 (+) 1056 WP_245049440.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF98_RS00720 (MPF98_00720) comB7 149740..149865 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPF98_RS00725 (MPF98_00725) comB8 149862..150605 (+) 744 WP_060760673.1 virB8 family protein Machinery gene
  MPF98_RS00730 (MPF98_00730) comB9 150605..151570 (+) 966 WP_245049442.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF98_RS00735 (MPF98_00735) comB10 151563..152699 (+) 1137 WP_245049444.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF98_RS00740 (MPF98_00740) - 152769..154181 (+) 1413 WP_245049446.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPF98_RS00745 (MPF98_00745) gmd 154195..155340 (+) 1146 WP_017283482.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28712.97 Da        Isoelectric Point: 8.9546

>NTDB_id=667704 MPF98_RS00725 WP_060760673.1 149862..150605(+) (comB8) [Helicobacter pylori strain Hpfe010]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIVAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667704 MPF98_RS00725 WP_060760673.1 149862..150605(+) (comB8) [Helicobacter pylori strain Hpfe010]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAATCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAATCCCATTGCGAGCGT
TTCTATTGTGGCTAAACTCATGAACGAAAACAAGCTAGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment