Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG705_RS11445 Genome accession   NZ_CP108857
Coordinates   2622534..2624756 (-) Length   740 a.a.
NCBI ID   WP_405820099.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00838     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2617534..2629756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG705_RS11430 (OG705_11455) - 2619189..2619920 (+) 732 WP_374361659.1 TetR/AcrR family transcriptional regulator -
  OG705_RS11435 (OG705_11460) - 2620063..2620380 (+) 318 WP_242572782.1 heavy-metal-associated domain-containing protein -
  OG705_RS11440 (OG705_11465) - 2620970..2622259 (-) 1290 WP_078077265.1 citrate synthase -
  OG705_RS11445 (OG705_11470) recD/recD2/recDB 2622534..2624756 (-) 2223 WP_405820099.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG705_RS11450 (OG705_11475) - 2625114..2625905 (-) 792 WP_383836886.1 sugar phosphate isomerase/epimerase family protein -
  OG705_RS11455 (OG705_11480) - 2625998..2627182 (-) 1185 WP_405820101.1 dihydrodipicolinate synthase family protein -
  OG705_RS11460 (OG705_11485) - 2627224..2628375 (-) 1152 WP_242572779.1 Gfo/Idh/MocA family protein -
  OG705_RS11465 (OG705_11490) - 2628500..2629561 (+) 1062 WP_383836733.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79786.38 Da        Isoelectric Point: 6.9305

>NTDB_id=667704 OG705_RS11445 WP_405820099.1 2622534..2624756(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00838]
MSNPAVLEGVLERITYSNEENGYTVARVDTGRGADLLTVVGSLLGAQPGESLRMEGRWASHPQYGKQFTVENYTTVLPAT
IQGIRRYLGSGLIKGIGPRIAERIVEHFGVDTLEIIEKEPKRLVEVPGLGPKRTKLIGAAWEEQKAIKEVMIFLQGVGVS
TSIAVRIYKKYGDASISVVKNEPYRLAADVWGIGFLTADRIAQAVGIPHDSPDRAKAGLQYALSQSTDQGHCFLPEEQLI
SDAVKLLQVDTGLVIDCLAELAAEEEGVVREKVPGPDGGEPVTAVYLVPFHRAELSLSAQLLRLLRAAEDRMPAFQDVVW
EKALPWLASRTGAELAPEQEAAVRLALTRKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGAE
ASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAEG
GPVPQVRLTRIFRQAQQSGVVTNAHRINSGVQPITQGLSDFFLFVEDETEEAGKLTVDVAARRIPATFGLDPRRDIQVLA
PMHRGPAGAGTLNGLLQQAITPARPDLPEKRLGGRVFRVGDKVTQIRNNYDKGRNGVFNGTVGVVTSLNTDDQCLTVRTD
EDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVSA
GRRCTALDHRLSGSLRAGNS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=667704 OG705_RS11445 WP_405820099.1 2622534..2624756(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00838]
ATGTCCAATCCGGCCGTGCTCGAAGGCGTTCTTGAGCGGATCACGTACAGCAACGAGGAGAACGGCTACACGGTCGCCCG
TGTCGACACCGGCCGTGGCGCCGATCTGCTCACCGTGGTCGGCTCGCTCCTCGGCGCGCAGCCGGGGGAGTCGCTGCGTA
TGGAGGGCCGTTGGGCCTCGCACCCGCAGTACGGCAAGCAGTTCACGGTGGAGAACTACACAACGGTCCTGCCCGCGACG
ATCCAGGGCATCCGCCGCTATCTCGGCTCCGGTCTGATCAAGGGAATCGGGCCGCGCATCGCCGAGCGGATCGTCGAGCA
TTTCGGCGTCGACACACTGGAGATCATCGAGAAGGAGCCGAAGAGGCTCGTCGAGGTCCCCGGTCTGGGCCCCAAGCGGA
CGAAACTGATCGGCGCCGCCTGGGAGGAGCAGAAGGCGATCAAGGAAGTCATGATCTTCCTTCAGGGCGTCGGTGTCTCG
ACGTCGATCGCCGTCCGCATCTACAAGAAGTACGGCGACGCCTCGATCTCCGTCGTGAAGAACGAGCCCTACCGGCTGGC
GGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGTATCCCGCACGACAGTCCGGACC
GCGCCAAGGCCGGACTGCAGTACGCGCTCTCCCAGTCGACCGACCAGGGCCACTGCTTCCTGCCCGAGGAGCAGCTCATC
TCGGACGCGGTGAAGCTTCTCCAGGTCGACACCGGTCTGGTCATCGACTGCCTCGCCGAACTCGCCGCCGAGGAGGAGGG
AGTCGTCAGGGAGAAGGTGCCGGGTCCTGACGGGGGCGAGCCGGTGACCGCCGTCTATCTGGTGCCCTTCCACCGCGCCG
AACTGTCCCTCTCCGCCCAGCTGCTGCGGCTGCTGCGCGCCGCCGAGGACCGGATGCCCGCCTTCCAGGACGTGGTCTGG
GAGAAGGCCCTGCCCTGGCTCGCGAGCCGCACAGGCGCCGAACTGGCCCCTGAGCAGGAAGCCGCCGTGCGGCTCGCCCT
CACCCGTAAGGTCGCCGTCCTGACCGGCGGGCCGGGCTGCGGCAAGTCCTTCACGGTCCGCTCGATCGTGGAGCTGGCCA
GGGCCAAGAAGGCCAAGGTGGTCCTCGCGGCACCCACGGGGCGCGCGGCCAAGCGCCTCGCCGAACTCACCGGTGCCGAG
GCGTCCACGGTCCACCGGCTGCTGGAACTCAAACCCGGCGGGGACGCCGCGTACGACAGGGACCGGCCGCTCGACGCCGA
TCTGGTGGTGGTCGACGAGGCGTCCATGCTGGATCTGCTGCTCGCCAACAAGCTCGTCAAGGCGGTGGCACCCGGTGCAC
ATCTGCTGCTCGTCGGCGATGTCGACCAGCTGCCGTCGGTCGGGGCCGGAGAGGTGCTGCGGGACCTGCTGGCCGAGGGC
GGGCCCGTGCCGCAGGTGCGTCTGACCCGGATCTTCCGACAGGCCCAGCAGTCGGGGGTGGTCACCAACGCCCACCGCAT
CAACTCCGGGGTCCAGCCCATCACCCAGGGCCTCAGTGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGAGGCCGGGA
AGCTCACGGTGGACGTCGCGGCCCGCCGGATCCCCGCCACCTTCGGGCTCGACCCGCGGCGCGACATCCAGGTGCTGGCC
CCGATGCACCGCGGCCCCGCCGGCGCGGGCACCCTCAACGGGCTACTCCAGCAGGCGATCACCCCCGCCCGGCCCGACCT
GCCCGAGAAGAGGCTCGGCGGTCGCGTCTTCCGTGTCGGAGACAAGGTCACCCAGATCCGCAACAACTACGACAAGGGGC
GGAACGGGGTCTTCAACGGCACGGTCGGGGTCGTGACCTCGCTGAACACGGACGACCAGTGCCTGACCGTGCGGACGGAC
GAGGACGAGGAAGTTCCTTACGACTTCGACGAGCTGGACGAGCTGGCGCACGCCTACGCGGTGACGATCCACCGCTCGCA
GGGCAGCGAGTACCCGGCCGTGGTCATTCCGGTCACCACCGGCGCCTGGATGATGCTCCAGCGGAATCTGCTGTACACGG
CGGTCACCCGTGCCAAGAAGCTCGTCGTTCTGGTCGGCTCCCGGAAGGCGATAGGTCAGGCAGTGCGTACGGTCTCCGCG
GGCCGGCGCTGCACCGCGCTCGACCACCGGCTGTCCGGCAGCCTCCGGGCCGGGAACTCCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(93-137)

Helix-hairpin-helix containing domain (HHH_RecD2)

(143-233)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

AAA domain (AAA_30)

(334-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.948

100

0.361

Multiple sequence alignment