Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG239_RS17080 Genome accession   NZ_CP108814
Coordinates   3515221..3515838 (-) Length   205 a.a.
NCBI ID   WP_328925723.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00868     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3510221..3520838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG239_RS17055 (OG239_17085) - 3510834..3511526 (+) 693 WP_405679949.1 hypothetical protein -
  OG239_RS17060 (OG239_17090) - 3511633..3512544 (+) 912 WP_405679948.1 hypothetical protein -
  OG239_RS17065 (OG239_17095) - 3512600..3512872 (-) 273 WP_328925720.1 hypothetical protein -
  OG239_RS17070 (OG239_17100) clpX 3513042..3514328 (-) 1287 WP_328925721.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG239_RS17075 (OG239_17105) clpP 3514482..3515153 (-) 672 WP_328925722.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG239_RS17080 (OG239_17110) clpP 3515221..3515838 (-) 618 WP_328925723.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG239_RS17085 (OG239_17115) tig 3516115..3517503 (-) 1389 WP_328925724.1 trigger factor -
  OG239_RS17100 (OG239_17130) - 3518082..3519674 (-) 1593 WP_405679947.1 FAD-binding oxidoreductase -
  OG239_RS17105 (OG239_17135) - 3519979..3520110 (-) 132 WP_328925726.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21744.69 Da        Isoelectric Point: 4.5654

>NTDB_id=667247 OG239_RS17080 WP_328925723.1 3515221..3515838(-) (clpP) [Streptomyces sp. NBC_00868]
MTNLMPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDEIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYD
TMQYIPNDVVTIGMGMAASMGQFLLTGGAKGKRFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAFHSG
QSVEAIIRDGDRDRWFTSEEAKEYGLIDEIISAASNVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=667247 OG239_RS17080 WP_328925723.1 3515221..3515838(-) (clpP) [Streptomyces sp. NBC_00868]
GTGACGAATCTGATGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACCGCGCAGCTCCTCCTCCTGG
CCGCCGAACCGGAGAAGGACATCTACCTGTACATCAACAGCCCGGGTGGCTCCGTGACGGCGGGCATGGCGGTCTACGAC
ACCATGCAGTACATCCCGAACGACGTCGTCACCATCGGTATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGG
TGGCGCCAAGGGCAAGCGCTTCGCCCTGCCGAACACCGACATCCTGATGCACCAGGGTTCCGCCGGCATCGGCGGCACCG
CGTCCGACATCAAGATCCAGGCCCAGTACCTGCTGCGCACCAAGCAGCGCATGGCCGAGATCACCGCGTTCCACTCGGGC
CAGTCCGTCGAGGCGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACCTCCGAGGAGGCCAAGGAGTACGGCCTCAT
CGACGAGATCATCTCGGCCGCGTCCAACGTGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.88

93.171

0.493
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.562

93.659

0.483
  clpP Lactococcus lactis subsp. cremoris KW2

49.744

95.122

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.231

95.122

0.468
  clpP Streptococcus mutans UA159

48.438

93.659

0.454
  clpP Streptococcus pyogenes MGAS315

47.12

93.171

0.439
  clpP Streptococcus pyogenes JRS4

47.12

93.171

0.439
  clpP Streptococcus pneumoniae R6

50.847

86.341

0.439
  clpP Streptococcus pneumoniae D39

50.847

86.341

0.439
  clpP Streptococcus pneumoniae Rx1

50.847

86.341

0.439
  clpP Streptococcus pneumoniae TIGR4

50.847

86.341

0.439
  clpP Streptococcus thermophilus LMG 18311

50

84.878

0.424
  clpP Streptococcus thermophilus LMD-9

50

84.878

0.424