Detailed information NTG0667245

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG239_RS17070
• Genome accession: NZ_CP108814
• Coordinates: 3513042..3514328 (-)
• Length: 428 a.a.
• NCBI ID: WP_328925721.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00868
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3508042..3519328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG239_RS17050 (OG239_17080)	-	3508114..3510735 (-)	2622	WP_328925717.1	valine--tRNA ligase	-
OG239_RS17055 (OG239_17085)	-	3510834..3511526 (+)	693	WP_405679949.1	hypothetical protein	-
OG239_RS17060 (OG239_17090)	-	3511633..3512544 (+)	912	WP_405679948.1	hypothetical protein	-
OG239_RS17065 (OG239_17095)	-	3512600..3512872 (-)	273	WP_328925720.1	hypothetical protein	-
OG239_RS17070 (OG239_17100)	clpX	3513042..3514328 (-)	1287	WP_328925721.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG239_RS17075 (OG239_17105)	clpP	3514482..3515153 (-)	672	WP_328925722.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG239_RS17080 (OG239_17110)	clpP	3515221..3515838 (-)	618	WP_328925723.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG239_RS17085 (OG239_17115)	tig	3516115..3517503 (-)	1389	WP_328925724.1	trigger factor	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46950.90 Da
• Isoelectric Point: 4.7729

>NTDB_id=667245 OG239_RS17070 WP_328925721.1 3513042..3514328(-) (clpX) [Streptomyces sp. NBC_00868]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFAATIRSKREIEASNQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
AEVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=667245 OG239_RS17070 WP_328925721.1 3513042..3514328(-) (clpX) [Streptomyces sp. NBC_00868]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAACTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCCGTCGCGGTCTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCGGGCAAGACCCTGCTGGCCCAGA
CGCTCGCGCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTGAGCGGCGAGGGCGTGCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACGGCCTCCGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGTGCGGGCGC
CAAGGGCATCGGCTTCGCGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCAACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTCATCACCTCCGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGTAACGCCCTGGTGAAGCAGTACCAGCGGTTGTTCGAACTCGACGGTGT
CGAGCTGGACTTCGAGCGCGAGGCCCTCGAAGCCATCGCGGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
GCCGAGGTCGTCCGCTCCAACGTCAACCCGACGCTGGTCCCGCGGATCGTCCCGAAGGACCAGGGCCCGCAGGAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.925	0.596
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521