Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG79_RS06915 Genome accession   NZ_CP094128
Coordinates   1441307..1442620 (-) Length   437 a.a.
NCBI ID   WP_245107417.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe055     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1436307..1447620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG79_RS06885 (MPG79_06885) nadC 1436770..1437591 (-) 822 WP_245107414.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG79_RS06890 (MPG79_06890) nadA 1437591..1438601 (-) 1011 WP_245107415.1 quinolinate synthase NadA -
  MPG79_RS06895 (MPG79_06895) - 1438591..1439394 (-) 804 WP_245107416.1 phosphatidylserine decarboxylase -
  MPG79_RS06900 (MPG79_06900) - 1439391..1439894 (-) 504 WP_000953083.1 hypothetical protein -
  MPG79_RS06905 (MPG79_06905) - 1439907..1440401 (-) 495 WP_180534552.1 hypothetical protein -
  MPG79_RS06910 (MPG79_06910) mqnP 1440394..1441278 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG79_RS06915 (MPG79_06915) comEC/comE3 1441307..1442620 (-) 1314 WP_245107417.1 ComEC/Rec2 family competence protein Machinery gene
  MPG79_RS06920 (MPG79_06920) - 1442617..1444077 (-) 1461 WP_245107418.1 replicative DNA helicase -
  MPG79_RS06925 (MPG79_06925) - 1444088..1445482 (-) 1395 WP_245107419.1 NAD(P)H-hydrate dehydratase -
  MPG79_RS06930 (MPG79_06930) crdS 1445485..1446687 (-) 1203 WP_245107898.1 copper-sensing histidine kinase CrdS -
  MPG79_RS06935 (MPG79_06935) crdR 1446653..1447294 (-) 642 WP_017280897.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49989.81 Da        Isoelectric Point: 9.7370

>NTDB_id=667246 MPG79_RS06915 WP_245107417.1 1441307..1442620(-) (comEC/comE3) [Helicobacter pylori strain Hpfe055]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTDLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHVHHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISISSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667246 MPG79_RS06915 WP_245107417.1 1441307..1442620(-) (comEC/comE3) [Helicobacter pylori strain Hpfe055]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTATTGGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAGACCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCACCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCACTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCACCTTTGTGGCTTTTGGGGGCACATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment