Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG806_RS17830 Genome accession   NZ_CP108797
Coordinates   3946818..3947426 (-) Length   202 a.a.
NCBI ID   WP_059205342.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00882     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3941818..3952426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG806_RS17815 (OG806_17805) - 3943533..3944570 (+) 1038 WP_406157446.1 hypothetical protein -
  OG806_RS17820 (OG806_17810) clpX 3944641..3945927 (-) 1287 WP_020116380.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG806_RS17825 (OG806_17815) clpP 3946088..3946768 (-) 681 WP_020136160.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG806_RS17830 (OG806_17820) clpP 3946818..3947426 (-) 609 WP_059205342.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG806_RS17835 (OG806_17825) tig 3947704..3949104 (-) 1401 WP_371567269.1 trigger factor -
  OG806_RS17845 (OG806_17835) - 3949651..3949887 (-) 237 WP_406157448.1 hypothetical protein -
  OG806_RS17855 (OG806_17845) - 3950427..3950933 (-) 507 WP_406157468.1 hypothetical protein -
  OG806_RS17860 (OG806_17850) - 3951075..3951269 (-) 195 WP_020136157.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21287.13 Da        Isoelectric Point: 4.5852

>NTDB_id=666716 OG806_RS17830 WP_059205342.1 3946818..3947426(-) (clpP) [Streptomyces sp. NBC_00882]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIYDTMQ
FIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHTGQTV
EQVTRDSDRDRWFDPEEAKEYGLIDDVIATAAGIPGGGGTGA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=666716 OG806_RS17830 WP_059205342.1 3946818..3947426(-) (clpP) [Streptomyces sp. NBC_00882]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGTTGCTGCTCCTTGCTGCCGCGGACC
CCGACAAGGACATCAACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAG
TTCATCAAGAACGACGTGATGACGATCGCGATGGGCCTCGCCGCCTCGATGGGCCAGTTCCTGCTCAGCGCGGGCACCCC
GGGCAAGCGTTTCGCCCTCCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGCTCGGCCTCGGACA
TCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGGCCCAGCACACGGGTCAGACCGTC
GAGCAGGTCACCCGTGACTCGGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGAGTACGGCCTCATCGACGATGT
CATCGCCACGGCTGCCGGTATCCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.064

84.653

0.5
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.297

90.099

0.48
  clpP Lactococcus lactis subsp. cremoris KW2

52.717

91.089

0.48
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.174

91.089

0.475
  clpP Streptococcus mutans UA159

53.757

85.644

0.46
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus thermophilus LMG 18311

52.023

85.644

0.446
  clpP Streptococcus thermophilus LMD-9

52.023

85.644

0.446
  clpP Streptococcus pneumoniae Rx1

51.724

86.139

0.446
  clpP Streptococcus pneumoniae D39

51.724

86.139

0.446
  clpP Streptococcus pneumoniae R6

51.724

86.139

0.446
  clpP Streptococcus pneumoniae TIGR4

51.724

86.139

0.446