Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG806_RS17825 Genome accession   NZ_CP108797
Coordinates   3946088..3946768 (-) Length   226 a.a.
NCBI ID   WP_020136160.1    Uniprot ID   A0ABU2VFT8
Organism   Streptomyces sp. NBC_00882     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3941088..3951768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG806_RS17815 (OG806_17805) - 3943533..3944570 (+) 1038 WP_406157446.1 hypothetical protein -
  OG806_RS17820 (OG806_17810) clpX 3944641..3945927 (-) 1287 WP_020116380.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG806_RS17825 (OG806_17815) clpP 3946088..3946768 (-) 681 WP_020136160.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG806_RS17830 (OG806_17820) clpP 3946818..3947426 (-) 609 WP_059205342.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG806_RS17835 (OG806_17825) tig 3947704..3949104 (-) 1401 WP_371567269.1 trigger factor -
  OG806_RS17845 (OG806_17835) - 3949651..3949887 (-) 237 WP_406157448.1 hypothetical protein -
  OG806_RS17855 (OG806_17845) - 3950427..3950933 (-) 507 WP_406157468.1 hypothetical protein -
  OG806_RS17860 (OG806_17850) - 3951075..3951269 (-) 195 WP_020136157.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24991.42 Da        Isoelectric Point: 4.6426

>NTDB_id=666715 OG806_RS17825 WP_020136160.1 3946088..3946768(-) (clpP) [Streptomyces sp. NBC_00882]
MNDFPGSGLYARTEAEYTGPRAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTADDALAYGLIDQIISTRKMNNAAVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=666715 OG806_RS17825 WP_020136160.1 3946088..3946768(-) (clpP) [Streptomyces sp. NBC_00882]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACCGAGGCCGAGTACACCGGCCCGCGCGCCGAATCCCGCTATGT
GATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCCGTCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACCGCGATCTACGACACCATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGTCAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCCAACGCGCGCGTGCTGATCCACCAGCCCTACAGCGAGACGGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCGCCCAGCTGGAAGACCTGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGACGACGCCCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGCCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376