Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SCSC_RS08900 Genome accession   NZ_AP014647
Coordinates   1799574..1800842 (-) Length   422 a.a.
NCBI ID   WP_006269781.1    Uniprot ID   A0AAD2SX88
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794574..1805842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS08865 (SCSC_1827) ruvX 1794709..1795128 (-) 420 WP_006270506.1 Holliday junction resolvase RuvX -
  SCSC_RS08870 (SCSC_1828) - 1795128..1795394 (-) 267 WP_009569646.1 IreB family regulatory phosphoprotein -
  SCSC_RS08875 (SCSC_1829) - 1795518..1796075 (-) 558 WP_003071476.1 SP0191 family lipoprotein -
  SCSC_RS08880 (SCSC_1830) - 1796180..1796722 (-) 543 WP_037566125.1 SP0191 family lipoprotein -
  SCSC_RS08885 (SCSC_1831) - 1796754..1797689 (-) 936 WP_006269888.1 IS30 family transposase -
  SCSC_RS08890 (SCSC_1832) spx 1797895..1798293 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SCSC_RS08895 (SCSC_1833) recA 1798380..1799525 (-) 1146 WP_006269775.1 recombinase RecA Machinery gene
  SCSC_RS08900 (SCSC_1834) cinA 1799574..1800842 (-) 1269 WP_006269781.1 competence/damage-inducible protein A Machinery gene
  SCSC_RS08905 (SCSC_1835) - 1800998..1801627 (-) 630 WP_006269784.1 ABC transporter ATP-binding protein -
  SCSC_RS08910 (SCSC_1836) - 1801624..1803633 (-) 2010 WP_006269786.1 hypothetical protein -
  SCSC_RS08915 (SCSC_1837) - 1803731..1804069 (-) 339 WP_006269785.1 hypothetical protein -
  SCSC_RS08920 (SCSC_1838) - 1804383..1805237 (+) 855 WP_006269782.1 Rgg/GadR/MutR family transcriptional regulator -
  SCSC_RS08925 (SCSC_1839) - 1805398..1805811 (+) 414 WP_006269778.1 EamA family transporter -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46123.91 Da        Isoelectric Point: 5.6477

>NTDB_id=66597 SCSC_RS08900 WP_006269781.1 1799574..1800842(-) (cinA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYFQTAVGDNENRLLSILEIAKKRSDLVILCGGLGPTEDDLTKQV
LAKFLNRRLVFDQVAMEKLDRFFASRLDYVRTPNNERQAQIVEDSTSLQNETGLAVGGVIEVSGVTYVVLPGPPSELKPM
VNNELIPILATDQKLYSRVLRFFGIGESQLVTLLGDLIDAQIDPTIAPYAKTGEVTLRLSTKASSQKEADTKFAYLEKKI
LAVQTFEKQRLVDLFYAYGDDNSLAQTTFELLRRAGKTVTAAESLTAGLFQATLANFSGASKVFSGGFVTYSMEEKSRML
DIPLADLEKYGVVSAFTAKKMAEQARKLTASDYAVSLTGVAGPDSLEGYPAGTVYIGLATTENVQSFKVNIAGRSRTDVR
KIAVLHAFNQLRKTLLKNENML

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=66597 SCSC_RS08900 WP_006269781.1 1799574..1800842(-) (cinA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAAGCAGAAATTATTGCTGTGGGCACCGAGATTCTGACCGGGCAAATTGTCAATACGAATGCTCAATTTTTATCGGA
AAAATTAGCTAGTTTAGGGATTGATGTTTATTTCCAGACTGCTGTCGGTGACAATGAAAATCGTCTTTTATCTATTTTGG
AAATTGCAAAGAAACGGAGCGATCTTGTCATTCTTTGTGGTGGCTTGGGTCCAACAGAAGATGACTTGACCAAACAGGTG
TTGGCAAAATTTTTAAATCGCAGGTTGGTCTTTGACCAAGTAGCTATGGAAAAATTAGATCGTTTCTTCGCGAGTCGACT
GGACTATGTTCGAACACCAAATAATGAGCGGCAAGCTCAAATAGTGGAAGATTCGACTTCTCTACAAAACGAAACCGGAC
TTGCGGTGGGGGGCGTGATTGAAGTAAGTGGTGTAACTTATGTTGTTCTGCCTGGTCCACCTAGTGAATTAAAACCTATG
GTGAACAATGAGCTGATTCCGATTTTAGCAACGGATCAAAAATTGTATTCAAGAGTTTTGCGCTTCTTTGGCATTGGTGA
AAGTCAATTAGTAACTCTTTTAGGAGATTTAATTGATGCTCAGATCGATCCGACCATTGCTCCTTATGCTAAGACGGGAG
AGGTGACATTGCGATTGTCCACAAAGGCTAGCAGTCAAAAAGAAGCAGATACTAAGTTTGCTTATTTGGAAAAGAAAATT
TTAGCTGTACAGACTTTTGAGAAACAACGTTTAGTGGACCTTTTCTATGCTTATGGAGATGATAATTCTCTAGCGCAGAC
AACTTTTGAATTGTTGAGGAGAGCAGGCAAGACTGTTACAGCAGCCGAAAGTTTGACTGCTGGCCTTTTTCAAGCAACTT
TGGCAAACTTTTCTGGAGCTTCCAAAGTCTTTAGTGGTGGCTTTGTTACTTACAGTATGGAGGAAAAGAGCCGCATGCTG
GACATTCCTTTGGCAGACTTGGAAAAATATGGAGTTGTTTCTGCTTTTACAGCAAAGAAAATGGCTGAGCAGGCCAGAAA
ATTGACTGCCAGTGACTATGCAGTGAGTTTGACGGGTGTGGCAGGTCCAGACAGCTTAGAAGGATATCCGGCAGGGACAG
TTTATATTGGCTTAGCAACTACAGAGAATGTACAATCTTTTAAGGTTAATATTGCCGGTCGTAGTCGGACTGATGTACGA
AAAATAGCCGTTCTGCATGCTTTCAATCAGTTACGAAAAACTTTATTAAAAAACGAAAATATGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(262-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.641

99.052

0.739
  cinA Streptococcus pneumoniae TIGR4

73.923

99.052

0.732
  cinA Streptococcus pneumoniae Rx1

73.923

99.052

0.732
  cinA Streptococcus pneumoniae R6

73.923

99.052

0.732
  cinA Streptococcus mitis NCTC 12261

73.684

99.052

0.73
  cinA Streptococcus pneumoniae D39

73.684

99.052

0.73
  cinA Streptococcus mutans UA159

71.158

100

0.713
  cinA Streptococcus suis isolate S10

55.288

98.578

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

45.215

99.052

0.448

Multiple sequence alignment