Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG714_RS33120 Genome accession   NZ_CP108728
Coordinates   7422319..7422999 (+) Length   226 a.a.
NCBI ID   WP_323185329.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00989     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7417319..7427999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG714_RS33090 (OG714_33065) - 7417634..7418776 (-) 1143 WP_406126537.1 acyltransferase family protein -
  OG714_RS33095 (OG714_33070) - 7419080..7419274 (+) 195 WP_026151384.1 hypothetical protein -
  OG714_RS33110 (OG714_33085) tig 7419958..7421325 (+) 1368 WP_406126539.1 trigger factor -
  OG714_RS33115 (OG714_33090) clpP 7421667..7422269 (+) 603 WP_406132042.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG714_RS33120 (OG714_33095) clpP 7422319..7422999 (+) 681 WP_323185329.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG714_RS33125 (OG714_33100) clpX 7423161..7424447 (+) 1287 WP_033285988.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG714_RS33130 (OG714_33105) - 7424546..7425544 (-) 999 WP_406126541.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25025.41 Da        Isoelectric Point: 4.5670

>NTDB_id=665797 OG714_RS33120 WP_323185329.1 7422319..7422999(+) (clpP) [Streptomyces sp. NBC_00989]
MNDFPGTGLYDRARAEYTAPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPLDKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=665797 OG714_RS33120 WP_323185329.1 7422319..7422999(+) (clpP) [Streptomyces sp. NBC_00989]
GTGAACGACTTCCCCGGCACCGGCCTGTACGACCGCGCACGCGCCGAATACACGGCCCCCGCCGCCGAGTCCCGTTACGT
GATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGCGACATCTCGATCTACATCAACAGCCCGGGCGGCTCCTTCACGGCCCTGACTGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACGTCCAGACGGTCTGCATGGGCCAGGCGGCGTCCGCCGCCGCCGTCCTGCTGGCGGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGGGGCCAGGTCTCCGAC
CTCGAGATCGCGGCCAACGAGATCCTCCGCATGCGTGCCCAGCTGGAGGACATGCTGGCCAAGCACTCGACCACCCCGCT
GGACAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus thermophilus LMG 18311

45.128

86.283

0.389
  clpP Streptococcus thermophilus LMD-9

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376