NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG714_RS33115	Genome accession	NZ_CP108728
Coordinates	7421667..7422269 (+)	Length	200 a.a.
NCBI ID	WP_406132042.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00989
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 7416667..7427269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG714_RS33085 (OG714_33060)	-	7417141..7417596 (+)	456	WP_406126535.1	HD domain-containing protein	-
OG714_RS33090 (OG714_33065)	-	7417634..7418776 (-)	1143	WP_406126537.1	acyltransferase family protein	-
OG714_RS33095 (OG714_33070)	-	7419080..7419274 (+)	195	WP_026151384.1	hypothetical protein	-
OG714_RS33110 (OG714_33085)	tig	7419958..7421325 (+)	1368	WP_406126539.1	trigger factor	-
OG714_RS33115 (OG714_33090)	clpP	7421667..7422269 (+)	603	WP_406132042.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG714_RS33120 (OG714_33095)	clpP	7422319..7422999 (+)	681	WP_323185329.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG714_RS33125 (OG714_33100)	clpX	7423161..7424447 (+)	1287	WP_033285988.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG714_RS33130 (OG714_33105)	-	7424546..7425544 (-)	999	WP_406126541.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21185.10 Da Isoelectric Point: 4.6747

                                >NTDB_id=665796 OG714_RS33115 WP_406132042.1 7421667..7422269(+) (clpP) [Streptomyces sp. NBC_00989]

MPTAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQFI

KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAELTSQHTGQSMEQ

ITRDSDRDRWFDALEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=665796 OG714_RS33115 WP_406132042.1 7421667..7422269(+) (clpP) [Streptomyces sp. NBC_00989]

ATGCCTACAGCCGCCGGCGAGCCCTCTATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGTGAGCGGATCAT

CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTCCTCCTTGCCGCCGACCCCGACA

AGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTTCATC

AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCCATGGGCCAGTTCCTTCTCAGCGCGGGTACCCCGGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCCGGTTCGGCCTCCGACATCAAGA

TCCACGCGGAGCGGCTGCTGCACACCAAGCGGCGCATGGCCGAGCTCACGTCCCAGCACACGGGCCAGAGCATGGAGCAG

ATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCGCTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTGATTCC

CACGGCCGCCGGTATGCCGGGCGGCGGCGGTACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	56.15	93.5	0.525
clpP	Lactococcus lactis subsp. cremoris KW2	52.381	94.5	0.495
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.852	94.5	0.49
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.579	95	0.49
clpP	Streptococcus mutans UA159	51.323	94.5	0.485
clpP	Streptococcus pyogenes MGAS315	49.206	94.5	0.465
clpP	Streptococcus pneumoniae D39	49.206	94.5	0.465
clpP	Streptococcus pneumoniae Rx1	49.206	94.5	0.465
clpP	Streptococcus pneumoniae R6	49.206	94.5	0.465
clpP	Streptococcus pneumoniae TIGR4	49.206	94.5	0.465
clpP	Streptococcus pyogenes JRS4	49.206	94.5	0.465
clpP	Streptococcus thermophilus LMG 18311	48.677	94.5	0.46
clpP	Streptococcus thermophilus LMD-9	48.677	94.5	0.46

Detailed information NTG0665796