Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MO328_RS15185 Genome accession   NZ_CP093448
Coordinates   3538173..3539432 (+) Length   419 a.a.
NCBI ID   WP_304532031.1    Uniprot ID   -
Organism   Xanthomonas translucens strain CIX207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3524292..3537787 3538173..3539432 flank 386


Gene organization within MGE regions


Location: 3524292..3539432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO328_RS15130 (MO328_15115) - 3524292..3526571 (+) 2280 WP_304532378.1 hypothetical protein -
  MO328_RS15135 (MO328_15120) - 3526684..3526989 (-) 306 WP_235049040.1 hypothetical protein -
  MO328_RS15140 (MO328_15125) - 3526938..3528236 (-) 1299 WP_235049041.1 hypothetical protein -
  MO328_RS15145 (MO328_15130) sucD 3528522..3529394 (-) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  MO328_RS15150 (MO328_15135) sucC 3529418..3530581 (-) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  MO328_RS15155 (MO328_15140) - 3530822..3532435 (+) 1614 WP_058361135.1 ATP-binding protein -
  MO328_RS15160 (MO328_15145) pilR 3532510..3533898 (+) 1389 WP_003466378.1 sigma-54 dependent transcriptional regulator Regulator
  MO328_RS15165 (MO328_15150) - 3534087..3534269 (+) 183 WP_003466380.1 YhfG family protein -
  MO328_RS15170 (MO328_15155) - 3534266..3534718 (+) 453 WP_230811680.1 Fic family protein -
  MO328_RS15175 (MO328_15160) pilB 3534893..3536629 (-) 1737 WP_304532030.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MO328_RS15180 (MO328_15165) - 3537377..3537787 (-) 411 WP_058362150.1 pilin -
  MO328_RS15185 (MO328_15170) pilC 3538173..3539432 (+) 1260 WP_304532031.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45676.92 Da        Isoelectric Point: 10.1825

>NTDB_id=664754 MO328_RS15185 WP_304532031.1 3538173..3539432(+) (pilC) [Xanthomonas translucens strain CIX207]
MSATRSAVSKEPVARNISQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGNKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPWMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNMAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=664754 MO328_RS15185 WP_304532031.1 3538173..3539432(+) (pilC) [Xanthomonas translucens strain CIX207]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATATCAGCCAGCAGGTCCCGTTCGTCTGGGAGGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGTCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCCGAAACCCAAACCCCTGTTCGGCGCTGCCGGCAACAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTCCTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCTGTCATGGCGGTGGCGCTGCTGGTCAGCTCGATCCTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTGGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCTGGCGCCACCGGCAATAGCGTCTACGAGAAG
GCCGTGCTGCGCATGCGCGACGACGTTTCGGTAGGCTACCCGGTCAACATGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCATTGAGCAGCCTGATCGAGCCGCTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTGATCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

51.238

96.42

0.494
  pilC Acinetobacter baylyi ADP1

51.365

96.181

0.494
  pilC Acinetobacter baumannii D1279779

50.868

96.181

0.489
  pilG Neisseria gonorrhoeae MS11

42.714

94.988

0.406
  pilC Vibrio cholerae strain A1552

41.728

96.659

0.403
  pilG Neisseria meningitidis 44/76-A

42.211

94.988

0.401
  pilC Vibrio campbellii strain DS40M4

39.547

94.749

0.375
  pilC Thermus thermophilus HB27

39

95.465

0.372