Detailed information NTG0664752

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: MO328_RS15160
• Genome accession: NZ_CP093448
• Coordinates: 3532510..3533898 (+)
• Length: 462 a.a.
• NCBI ID: WP_003466378.1
• Uniprot ID: -
• Organism: Xanthomonas translucens strain CIX207
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3524292..3537787	3532510..3533898	within	0

Gene organization within MGE regions

Location: 3524292..3537787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MO328_RS15130 (MO328_15115)	-	3524292..3526571 (+)	2280	WP_304532378.1	hypothetical protein	-
MO328_RS15135 (MO328_15120)	-	3526684..3526989 (-)	306	WP_235049040.1	hypothetical protein	-
MO328_RS15140 (MO328_15125)	-	3526938..3528236 (-)	1299	WP_235049041.1	hypothetical protein	-
MO328_RS15145 (MO328_15130)	sucD	3528522..3529394 (-)	873	WP_003466372.1	succinate--CoA ligase subunit alpha	-
MO328_RS15150 (MO328_15135)	sucC	3529418..3530581 (-)	1164	WP_003466374.1	ADP-forming succinate--CoA ligase subunit beta	-
MO328_RS15155 (MO328_15140)	-	3530822..3532435 (+)	1614	WP_058361135.1	ATP-binding protein	-
MO328_RS15160 (MO328_15145)	pilR	3532510..3533898 (+)	1389	WP_003466378.1	sigma-54 dependent transcriptional regulator	Regulator
MO328_RS15165 (MO328_15150)	-	3534087..3534269 (+)	183	WP_003466380.1	YhfG family protein	-
MO328_RS15170 (MO328_15155)	-	3534266..3534718 (+)	453	WP_230811680.1	Fic family protein	-
MO328_RS15175 (MO328_15160)	pilB	3534893..3536629 (-)	1737	WP_304532030.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MO328_RS15180 (MO328_15165)	-	3537377..3537787 (-)	411	WP_058362150.1	pilin	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49892.38 Da
• Isoelectric Point: 6.7311

>NTDB_id=664752 MO328_RS15160 WP_003466378.1 3532510..3533898(+) (pilR) [Xanthomonas translucens strain CIX207]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNRERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSARPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYPFPGNVRELENILERALAMAEEDQISAADLHLPQPGNSARVAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=664752 MO328_RS15160 WP_003466378.1 3532510..3533898(+) (pilR) [Xanthomonas translucens strain CIX207]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACCGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGTTGGTCGCGCGCACCATCCATGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTAATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGCGCGCCCGGTGGGCGC
CTCGATCGAGGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACCCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTTGAGCGCGCCCTGGCAATGGCCGAAG
AGGACCAGATCAGCGCCGCCGATCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGTCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.309	99.351	0.619
pilR	Acinetobacter baumannii strain A118	47.198	100	0.474