Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG368_RS25085 Genome accession   NZ_CP108643
Coordinates   5650529..5651242 (+) Length   237 a.a.
NCBI ID   WP_102927978.1    Uniprot ID   A0ABW8BH14
Organism   Streptomyces sp. NBC_01124     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5645529..5656242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG368_RS25055 (OG368_25035) - 5645545..5646711 (-) 1167 WP_361666372.1 acyltransferase family protein -
  OG368_RS25060 (OG368_25040) - 5647400..5647594 (+) 195 WP_007449834.1 hypothetical protein -
  OG368_RS25075 (OG368_25055) tig 5648145..5649542 (+) 1398 WP_125631668.1 trigger factor -
  OG368_RS25080 (OG368_25060) clpP 5649873..5650478 (+) 606 WP_051005918.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG368_RS25085 (OG368_25065) clpP 5650529..5651242 (+) 714 WP_102927978.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG368_RS25090 (OG368_25070) clpX 5651435..5652721 (+) 1287 WP_061444769.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG368_RS25095 (OG368_25075) - 5652795..5653763 (-) 969 WP_197924304.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26293.79 Da        Isoelectric Point: 4.6559

>NTDB_id=664217 OG368_RS25085 WP_102927978.1 5650529..5651242(+) (clpP) [Streptomyces sp. NBC_01124]
MNDFPGSGLYDRMQATQDMRAAASQGRYTGPQAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVM
AQLLCLESMDPDRDISIYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMGLPNARVLIHQP
YSETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=664217 OG368_RS25085 WP_102927978.1 5650529..5651242(+) (clpP) [Streptomyces sp. NBC_01124]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCATGCAGGCCACGCAGGACATGCGCGCCGCCGCCTCCCAGGGCCG
CTACACCGGCCCCCAGGCGGAGTCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACG
ACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATG
GCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCAC
CGCGCTCACGGCCATCTACGACACGATGCAGTACGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGG
CCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGGGCAAGCGCATGGGCCTGCCGAACGCCCGCGTCCTGATCCACCAGCCG
TACAGCGAGACCGGCCGCGGCCAGGTCTCCGACCTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCTCGCAGCTGGA
GGAGATGCTGGCCAAGCACTCCACCACGCCGGTCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCG
AGGACGCGCTGAGCTACGGCCTGATCGACCAGATCATCACCACCCGGAAGATGGACAACTCCTCTCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(48-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

80.169

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

79.325

0.397
  clpP Streptococcus mutans UA159

43.902

86.498

0.38
  clpP Streptococcus pyogenes JRS4

44.279

84.81

0.376
  clpP Streptococcus pyogenes MGAS315

44.279

84.81

0.376
  clpP Lactococcus lactis subsp. cremoris KW2

44.059

85.232

0.376
  clpP Streptococcus thermophilus LMG 18311

45.128

82.278

0.371
  clpP Streptococcus thermophilus LMD-9

45.128

82.278

0.371
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.069

85.232

0.367
  clpP Streptococcus pneumoniae Rx1

43.878

82.7

0.363
  clpP Streptococcus pneumoniae D39

43.878

82.7

0.363
  clpP Streptococcus pneumoniae R6

43.878

82.7

0.363
  clpP Streptococcus pneumoniae TIGR4

43.878

82.7

0.363