NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG368_RS25080	Genome accession	NZ_CP108643
Coordinates	5649873..5650478 (+)	Length	201 a.a.
NCBI ID	WP_051005918.1	Uniprot ID	A0ABW8BH27
Organism	Streptomyces sp. NBC_01124
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5644873..5655478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG368_RS25050 (OG368_25030)	-	5645025..5645504 (+)	480	WP_176155294.1	HD domain-containing protein	-
OG368_RS25055 (OG368_25035)	-	5645545..5646711 (-)	1167	WP_361666372.1	acyltransferase family protein	-
OG368_RS25060 (OG368_25040)	-	5647400..5647594 (+)	195	WP_007449834.1	hypothetical protein	-
OG368_RS25075 (OG368_25055)	tig	5648145..5649542 (+)	1398	WP_125631668.1	trigger factor	-
OG368_RS25080 (OG368_25060)	clpP	5649873..5650478 (+)	606	WP_051005918.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG368_RS25085 (OG368_25065)	clpP	5650529..5651242 (+)	714	WP_102927978.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG368_RS25090 (OG368_25070)	clpX	5651435..5652721 (+)	1287	WP_061444769.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG368_RS25095 (OG368_25075)	-	5652795..5653763 (-)	969	WP_197924304.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21226.13 Da Isoelectric Point: 4.6747

                                >NTDB_id=664216 OG368_RS25080 WP_051005918.1 5649873..5650478(+) (clpP) [Streptomyces sp. NBC_01124]

MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQF

IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE

QITRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide

Download Length: 606 bp

                                >NTDB_id=664216 OG368_RS25080 WP_051005918.1 5649873..5650478(+) (clpP) [Streptomyces sp. NBC_01124]

ATGCCCTCAGCCGCCGGCGAGCCCTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT

CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCGCCGACCCGG

ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGTATGGCGATCTACGACACCATGCAGTTC

ATCAAGAACGACGTGGTGACGATCGCGATGGGTCTCGCGGCCTCCATGGGACAGTTCCTGCTCAGCGCGGGCACCCCCGG

CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCGGCCTCGGACATCA

AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTGACCTCTCAGCACACCGGCCAGACGGTCGAG

CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT

CCCCACGGCCGCCGGCATGCCGGGCGGCGGTGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	59.064	85.075	0.502
clpP	Lactococcus lactis subsp. cremoris KW2	53.261	91.542	0.488
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.973	92.04	0.488
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.717	91.542	0.483
clpP	Streptococcus mutans UA159	55.491	86.07	0.478
clpP	Streptococcus pyogenes MGAS315	52.601	86.07	0.453
clpP	Streptococcus pyogenes JRS4	52.601	86.07	0.453
clpP	Streptococcus thermophilus LMG 18311	51.445	86.07	0.443
clpP	Streptococcus thermophilus LMD-9	51.445	86.07	0.443
clpP	Streptococcus pneumoniae Rx1	50.867	86.07	0.438
clpP	Streptococcus pneumoniae D39	50.867	86.07	0.438
clpP	Streptococcus pneumoniae R6	50.867	86.07	0.438
clpP	Streptococcus pneumoniae TIGR4	50.867	86.07	0.438

Detailed information NTG0664216