Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LIW09_RS01700 Genome accession   NZ_CP093311
Coordinates   373618..374886 (-) Length   422 a.a.
NCBI ID   WP_256646259.1    Uniprot ID   -
Organism   Thermomonas paludicola strain IMCC34681     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368618..379886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIW09_RS01680 secA 368870..371587 (+) 2718 WP_256646256.1 preprotein translocase subunit SecA -
  LIW09_RS01685 - 371631..372008 (+) 378 Protein_332 NUDIX domain-containing protein -
  LIW09_RS01690 coaE 372037..372675 (-) 639 WP_256646257.1 dephospho-CoA kinase -
  LIW09_RS01695 - 372736..373599 (-) 864 WP_256646258.1 A24 family peptidase -
  LIW09_RS01700 pilC 373618..374886 (-) 1269 WP_256646259.1 type II secretion system F family protein Machinery gene
  LIW09_RS01705 pilB 374898..376622 (-) 1725 WP_256646260.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LIW09_RS01710 - 376928..377194 (+) 267 WP_256646261.1 helix-turn-helix transcriptional regulator -
  LIW09_RS01715 - 377187..378416 (+) 1230 WP_256646262.1 type II toxin-antitoxin system HipA family toxin -
  LIW09_RS01720 - 378476..379336 (+) 861 WP_256646263.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46243.68 Da        Isoelectric Point: 10.1442

>NTDB_id=663459 LIW09_RS01700 WP_256646259.1 373618..374886(-) (pilC) [Thermomonas paludicola strain IMCC34681]
MSARRAAISKAREKAETRRLNPLEEFVWQGRDKRGKVMKGEQTARNANLLRAELRKQGITPTVVKPKPKPLFGGAAKKIS
PRDIAVFSRQLATMMKSGVPIVMALEIIGGGNKNPTMKKMVTGLRNDIEGGASIFEAMSQYPVQFDELYRNLVRAGESSG
VLETVLETIATYKENIESIKGKIKKALFYPAAVIAVAILVSAVLMVYVVPIFKETFSSFGADLPAFTSLVFGISDILVKW
FWLIGIILGAGIGFFLYTYKRSTKLQHTIDRLMLKFPVIGKVLNDSAIARFSRTLAVTFRAGVPLVEALDSVAGATGNMV
YEQAVHKMKDDVAVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDTMLYKVAEFYEEEVSNTVDALSSLIEPMVMVIIG
GLVGSIVVAMYLPIFKIAMTVM

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=663459 LIW09_RS01700 WP_256646259.1 373618..374886(-) (pilC) [Thermomonas paludicola strain IMCC34681]
ATGTCCGCACGCAGAGCCGCGATCAGCAAGGCCCGGGAAAAAGCCGAAACTCGCCGGCTGAACCCGCTGGAGGAGTTTGT
CTGGCAGGGCCGCGACAAGCGCGGCAAGGTGATGAAAGGCGAGCAGACGGCGCGCAACGCCAACCTGCTGCGCGCCGAAC
TGCGCAAGCAGGGGATCACCCCCACCGTGGTCAAGCCCAAGCCCAAGCCCTTGTTCGGCGGCGCTGCCAAGAAAATCTCG
CCGCGCGACATCGCCGTGTTCAGCCGCCAGCTGGCCACCATGATGAAGTCCGGCGTGCCCATCGTGATGGCCCTGGAGAT
CATCGGCGGCGGCAACAAGAATCCGACGATGAAGAAAATGGTCACCGGCCTGCGCAATGACATCGAGGGCGGCGCGTCCA
TCTTCGAAGCAATGAGCCAGTACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGCGCCGGCGAGTCTTCCGGC
GTGCTGGAGACGGTGCTGGAGACCATCGCCACCTACAAGGAAAACATCGAGAGCATCAAGGGCAAGATCAAGAAGGCGCT
GTTCTACCCGGCGGCGGTGATCGCTGTCGCGATCCTGGTGTCCGCCGTATTGATGGTCTATGTGGTGCCGATCTTCAAGG
AAACGTTCTCGAGCTTCGGTGCGGATCTGCCAGCCTTCACCAGTTTGGTGTTCGGCATTTCCGATATCCTGGTCAAATGG
TTCTGGCTGATCGGCATCATCCTGGGTGCGGGAATCGGCTTCTTCCTCTATACCTACAAGCGCTCCACCAAACTGCAGCA
CACCATCGACCGGCTGATGCTGAAGTTCCCGGTGATCGGCAAGGTGCTCAACGACTCGGCCATCGCCCGCTTCTCCCGCA
CCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTGGAGGCGCTGGACAGCGTGGCCGGGGCCACCGGCAACATGGTC
TATGAACAGGCCGTGCACAAGATGAAGGACGACGTGGCGGTGGGTTATCCGGTCAACGTGGCGATGAAGCAGGTCAACCT
GTTCCCGCACATGGTGGTGCAGATGACCGCCATCGGTGAGGAAGCCGGCGCGCTGGACACCATGCTGTACAAGGTGGCCG
AGTTCTACGAGGAAGAGGTCAGCAATACGGTGGATGCGCTCTCCAGCCTGATCGAGCCGATGGTGATGGTGATCATTGGC
GGCCTGGTGGGCTCCATCGTGGTGGCCATGTATCTGCCGATCTTCAAGATCGCAATGACGGTGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53

94.787

0.502
  pilC Acinetobacter baylyi ADP1

51.889

94.076

0.488
  pilC Pseudomonas stutzeri DSM 10701

51.637

94.076

0.486
  pilC Acinetobacter baumannii D1279779

50.126

94.076

0.472
  pilG Neisseria gonorrhoeae MS11

43.781

95.261

0.417
  pilG Neisseria meningitidis 44/76-A

43.532

95.261

0.415
  pilC Vibrio cholerae strain A1552

40.299

95.261

0.384
  pilC Vibrio campbellii strain DS40M4

39.241

93.602

0.367
  pilC Thermus thermophilus HB27

37.965

95.498

0.363