Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PST29_RS25780 Genome accession   NZ_AP014628
Coordinates   5796504..5797721 (+) Length   405 a.a.
NCBI ID   WP_060844664.1    Uniprot ID   A0AAD1BFJ9
Organism   Pseudomonas sp. St29     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5791504..5802721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST29_RS25765 (PST29_5247) - 5792060..5794978 (+) 2919 WP_060844662.1 DUF748 domain-containing protein -
  PST29_RS25770 (PST29_5248) - 5795168..5795524 (-) 357 WP_060841137.1 BON domain-containing protein -
  PST29_RS25775 (PST29_5249) - 5795766..5796182 (-) 417 WP_060844663.1 pilin -
  PST29_RS25780 (PST29_5250) pilC 5796504..5797721 (+) 1218 WP_060844664.1 type II secretion system F family protein Machinery gene
  PST29_RS25785 (PST29_5251) pilD 5797724..5798596 (+) 873 WP_060841140.1 A24 family peptidase Machinery gene
  PST29_RS25790 (PST29_5252) coaE 5798593..5799216 (+) 624 WP_060844665.1 dephospho-CoA kinase -
  PST29_RS25795 (PST29_5253) yacG 5799213..5799416 (+) 204 WP_060841142.1 DNA gyrase inhibitor YacG -
  PST29_RS25800 (PST29_5254) - 5799436..5799651 (-) 216 WP_016968161.1 hypothetical protein -
  PST29_RS25805 (PST29_5255) - 5799715..5800404 (-) 690 WP_016968160.1 energy-coupling factor ABC transporter permease -
  PST29_RS25810 (PST29_5256) - 5800401..5800868 (-) 468 WP_060844666.1 hypothetical protein -
  PST29_RS25815 (PST29_5257) - 5801015..5801644 (+) 630 WP_060841144.1 DUF1780 domain-containing protein -
  PST29_RS25820 (PST29_5258) - 5801833..5802006 (+) 174 WP_060841145.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43877.44 Da        Isoelectric Point: 10.4713

>NTDB_id=66336 PST29_RS25780 WP_060844664.1 5796504..5797721(+) (pilC) [Pseudomonas sp. St29]
MAAKAPTTSVYLWHGIDGQGQVMHGELSAANPGLIRARLRKQGITPTRVRRKPSAWPRLGQGISPREIALFTRQLATLMQ
AGVPLLQAFDIIAEGFEQPLMRHLLASLKREIEAGSSLASALRRHPRHFDALYCNLVDAGEQAGALDTLLERVATHKEKS
ENLKTRVKQAMVYPLAVIGVAVVVSSILLLKVVPQFQSLFAGFDAELPPLTQWVINLSQVLQRHGGLLLAASLLVGVGLI
QAYRRSARLRDTVDVGLLRLPLTGPLLQKSAVARYARTLATTFAAGVPLVQALDSVAGTSGNRVFKQAVERIRQQVASGM
QLHFAMRASGVFPGMAVQMTAIGEESGTLDHLLEKVATHYEVEVDHLVDSLTRLMEPLIMVLLGSIVGALVVAMYLPVFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=66336 PST29_RS25780 WP_060844664.1 5796504..5797721(+) (pilC) [Pseudomonas sp. St29]
ATGGCGGCAAAAGCTCCCACGACGAGTGTCTATCTCTGGCATGGCATCGACGGCCAGGGCCAGGTGATGCACGGCGAACT
GAGCGCTGCCAACCCGGGACTGATCAGGGCCCGGTTGCGCAAGCAGGGCATCACCCCGACCCGGGTGCGCCGCAAGCCAA
GTGCCTGGCCTCGACTGGGCCAAGGGATCAGCCCCCGGGAGATCGCCCTGTTCACTCGCCAACTGGCCACGTTGATGCAG
GCCGGGGTGCCGCTGCTGCAGGCCTTCGACATCATTGCCGAAGGCTTTGAACAGCCCCTGATGCGCCATCTGCTGGCCAG
CCTCAAGCGCGAAATCGAGGCCGGTTCCAGCCTGGCGAGCGCACTGCGCCGGCATCCACGCCACTTTGATGCCCTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGGGCCCTGGACACGCTGCTGGAACGTGTCGCGACCCACAAGGAAAAGAGC
GAAAACCTCAAGACCCGGGTAAAGCAAGCCATGGTCTATCCGCTGGCGGTGATCGGCGTGGCAGTCGTCGTCAGCAGCAT
CCTGTTGCTCAAAGTGGTTCCCCAGTTCCAGAGCCTGTTCGCCGGGTTCGACGCCGAGTTGCCGCCGCTCACTCAATGGG
TGATCAACCTCTCCCAGGTGCTCCAGCGCCACGGCGGACTCTTGCTCGCCGCCAGCCTGCTGGTCGGTGTCGGCCTGATC
CAGGCCTATCGACGCTCGGCACGCCTGCGGGACACGGTGGATGTGGGGCTGCTGCGCTTGCCCCTGACCGGCCCCTTGCT
GCAAAAATCCGCCGTGGCGCGCTATGCCCGAACCCTGGCAACCACTTTCGCTGCCGGGGTGCCCCTGGTGCAGGCTCTGG
ACTCGGTGGCCGGAACCAGTGGCAATCGGGTCTTCAAGCAAGCGGTGGAGCGCATTCGCCAACAGGTGGCCAGCGGCATG
CAATTGCACTTTGCCATGCGCGCCAGCGGGGTCTTCCCCGGCATGGCGGTCCAGATGACCGCCATCGGTGAAGAGTCCGG
AACCCTGGACCACTTGCTGGAAAAGGTCGCGACCCACTATGAAGTCGAGGTGGACCACCTGGTGGACAGCCTGACCCGTC
TCATGGAGCCGTTGATCATGGTGCTTCTGGGCAGTATCGTCGGCGCCCTGGTGGTGGCCATGTACCTGCCTGTCTTTCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.272

100

0.583
  pilC Acinetobacter baylyi ADP1

52.567

100

0.531
  pilC Acinetobacter baumannii D1279779

52.228

99.753

0.521
  pilC Legionella pneumophila strain ERS1305867

46.683

100

0.469
  pilC Vibrio campbellii strain DS40M4

40.988

100

0.41
  pilG Neisseria gonorrhoeae MS11

42.857

95.062

0.407
  pilC Vibrio cholerae strain A1552

41.73

97.037

0.405
  pilG Neisseria meningitidis 44/76-A

42.078

95.062

0.4
  pilC Thermus thermophilus HB27

37.093

98.519

0.365

Multiple sequence alignment