Detailed information NTG0066337

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PST29_RS25785
• Genome accession: NZ_AP014628
• Coordinates: 5797724..5798596 (+)
• Length: 290 a.a.
• NCBI ID: WP_060841140.1
• Uniprot ID: A0AAD1BCB8
• Organism: Pseudomonas sp. St29
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5792724..5803596

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PST29_RS25770 (PST29_5248)	-	5795168..5795524 (-)	357	WP_060841137.1	BON domain-containing protein	-
PST29_RS25775 (PST29_5249)	-	5795766..5796182 (-)	417	WP_060844663.1	pilin	-
PST29_RS25780 (PST29_5250)	pilC	5796504..5797721 (+)	1218	WP_060844664.1	type II secretion system F family protein	Machinery gene
PST29_RS25785 (PST29_5251)	pilD	5797724..5798596 (+)	873	WP_060841140.1	A24 family peptidase	Machinery gene
PST29_RS25790 (PST29_5252)	coaE	5798593..5799216 (+)	624	WP_060844665.1	dephospho-CoA kinase	-
PST29_RS25795 (PST29_5253)	yacG	5799213..5799416 (+)	204	WP_060841142.1	DNA gyrase inhibitor YacG	-
PST29_RS25800 (PST29_5254)	-	5799436..5799651 (-)	216	WP_016968161.1	hypothetical protein	-
PST29_RS25805 (PST29_5255)	-	5799715..5800404 (-)	690	WP_016968160.1	energy-coupling factor ABC transporter permease	-
PST29_RS25810 (PST29_5256)	-	5800401..5800868 (-)	468	WP_060844666.1	hypothetical protein	-
PST29_RS25815 (PST29_5257)	-	5801015..5801644 (+)	630	WP_060841144.1	DUF1780 domain-containing protein	-
PST29_RS25820 (PST29_5258)	-	5801833..5802006 (+)	174	WP_060841145.1	DUF3094 family protein	-
PST29_RS25825 (PST29_5259)	-	5802067..5803365 (+)	1299	WP_060841146.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31856.11 Da
• Isoelectric Point: 7.9880

>NTDB_id=66337 PST29_RS25785 WP_060841140.1 5797724..5798596(+) (pilD) [Pseudomonas sp. St29]
MSLTEVLTLYPLAFVLAALILGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLPPEPAGAPYNLLLPHSQCPHCTQPIR
PWENIPLLSYLCLRGRCRHCKAAISPRYPLTELACGLISAFVAWHFGFGWQAGLLLILSWGLIAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLVSLGDALWGAVLGYLSLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AIIGTLMLRLNRAKTSTPIPFGPFLAIAGWIALLWGGQMTDFYLQAVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=66337 PST29_RS25785 WP_060841140.1 5797724..5798596(+) (pilD) [Pseudomonas sp. St29]
ATGTCCTTGACTGAAGTCCTGACCCTCTACCCCCTGGCTTTCGTGTTGGCCGCCCTGATACTGGGGCTGCTGGTCGGCAG
CTTCCTCAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCGCCCAGGCCCACGAAGTGCTGGGGC
TGCCCCCGGAGCCGGCAGGGGCGCCCTATAACCTGCTGCTGCCCCATTCCCAGTGTCCGCATTGCACACAGCCAATCCGC
CCCTGGGAGAACATTCCCCTGCTCAGCTATCTGTGCCTGCGGGGCCGTTGCCGCCATTGCAAGGCCGCCATCAGCCCCCG
CTACCCGCTGACCGAGCTGGCCTGCGGGTTGATCTCGGCCTTCGTTGCCTGGCACTTCGGCTTCGGCTGGCAGGCGGGCC
TGTTGCTGATCCTCAGCTGGGGGCTGATCGCCATGAGTCTGATCGATGCCGATCACCAGCTGCTGCCCGACGTGCTGGTG
TTGCCGTTGCTGTGGCTGGGACTGATCGCCAACAGCTTCGGGCTGCTGGTCAGCCTGGGCGATGCCCTGTGGGGGGCGGT
ACTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATGGGGCACGGCGACT
TCAAGCTGCTGGCGATGCTGGGAGCCTGGGGCGGATGGCAGGTGCTGCCGCTGACCCTGCTCCTCTCCTCACTGGTGGGC
GCCATCATCGGCACCCTCATGCTGCGCCTGAACCGGGCCAAAACCTCGACGCCGATCCCCTTTGGCCCTTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATGACCGACTTCTATCTGCAGGCTGTCGGCTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.401	98.966	0.548
pilD	Vibrio campbellii strain DS40M4	50.526	98.276	0.497
pilD	Acinetobacter baumannii D1279779	50	94.483	0.472
pilD	Acinetobacter nosocomialis M2	50	94.483	0.472
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459