Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG220_RS12905 Genome accession   NZ_CP108582
Coordinates   2871630..2872235 (-) Length   201 a.a.
NCBI ID   WP_326692941.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866630..2877235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS12885 (OG220_12855) - 2867161..2868192 (+) 1032 WP_326690390.1 hypothetical protein -
  OG220_RS12890 (OG220_12860) - 2868463..2869308 (+) 846 WP_405803611.1 hypothetical protein -
  OG220_RS12895 (OG220_12865) clpX 2869456..2870739 (-) 1284 WP_326692942.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG220_RS12900 (OG220_12870) clpP 2870903..2871562 (-) 660 WP_326690388.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG220_RS12905 (OG220_12875) clpP 2871630..2872235 (-) 606 WP_326692941.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG220_RS12910 (OG220_12880) tig 2872507..2873949 (-) 1443 WP_326690387.1 trigger factor -
  OG220_RS12925 (OG220_12895) - 2874576..2874770 (-) 195 WP_326690386.1 hypothetical protein -
  OG220_RS12930 (OG220_12900) - 2875369..2876592 (+) 1224 WP_405803614.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21393.15 Da        Isoelectric Point: 4.4782

>NTDB_id=663335 OG220_RS12905 WP_326692941.1 2871630..2872235(-) (clpP) [Streptomyces sp. NBC_01187]
MPSAAGEPNFGGGLGDQVYNRLLDERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSIQAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLTAGTPGKRFALPNADILIHQPSAGLAGSATDIKIHAEQLLRTKKKMAELSAAHSGQTVE
QWTRDADRDRWFTAEEARDYGLIDEVYGNAAQLPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=663335 OG220_RS12905 WP_326692941.1 2871630..2872235(-) (clpP) [Streptomyces sp. NBC_01187]
ATGCCTTCCGCCGCCGGTGAGCCCAACTTCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGACGAGCGCAT
CATTTTCCTCGGCCAGCCGGTGGACGACGATATCGCCAACAAGATCACCGCCCAGCTTCTGCTCCTTGCCGCCGATCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCCAGGCGGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTCGTCACCATCGCCATGGGACTGGCGGCTTCGATGGGGCAGTTCCTGCTCACGGCGGGCACCCCCGG
CAAGCGGTTCGCGCTGCCGAACGCCGACATCCTCATCCACCAGCCCTCCGCGGGCCTGGCGGGCTCCGCGACGGACATCA
AGATCCACGCCGAGCAGCTTCTGCGCACCAAGAAGAAGATGGCCGAGCTGTCGGCCGCGCACAGCGGTCAGACCGTCGAG
CAGTGGACCCGCGACGCCGACCGTGACCGCTGGTTCACCGCTGAGGAGGCGCGGGACTACGGCCTCATCGACGAGGTCTA
CGGCAACGCCGCGCAGCTTCCCGGCGGCGGCGGAACGGGTGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

54.545

93.035

0.507
  clpP Lactococcus lactis subsp. cremoris KW2

54.286

87.065

0.473
  clpP Streptococcus mutans UA159

54.286

87.065

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.714

87.065

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.706

84.577

0.463
  clpP Streptococcus pyogenes MGAS315

52

87.065

0.453
  clpP Streptococcus pyogenes JRS4

52

87.065

0.453
  clpP Streptococcus thermophilus LMG 18311

52

87.065

0.453
  clpP Streptococcus thermophilus LMD-9

52

87.065

0.453
  clpP Streptococcus pneumoniae Rx1

51.429

87.065

0.448
  clpP Streptococcus pneumoniae D39

51.429

87.065

0.448
  clpP Streptococcus pneumoniae R6

51.429

87.065

0.448
  clpP Streptococcus pneumoniae TIGR4

51.429

87.065

0.448