Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG220_RS12900 Genome accession   NZ_CP108582
Coordinates   2870903..2871562 (-) Length   219 a.a.
NCBI ID   WP_326690388.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2865903..2876562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS12885 (OG220_12855) - 2867161..2868192 (+) 1032 WP_326690390.1 hypothetical protein -
  OG220_RS12890 (OG220_12860) - 2868463..2869308 (+) 846 WP_405803611.1 hypothetical protein -
  OG220_RS12895 (OG220_12865) clpX 2869456..2870739 (-) 1284 WP_326692942.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG220_RS12900 (OG220_12870) clpP 2870903..2871562 (-) 660 WP_326690388.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG220_RS12905 (OG220_12875) clpP 2871630..2872235 (-) 606 WP_326692941.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG220_RS12910 (OG220_12880) tig 2872507..2873949 (-) 1443 WP_326690387.1 trigger factor -
  OG220_RS12925 (OG220_12895) - 2874576..2874770 (-) 195 WP_326690386.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24219.45 Da        Isoelectric Point: 4.5153

>NTDB_id=663334 OG220_RS12900 WP_326690388.1 2870903..2871562(-) (clpP) [Streptomyces sp. NBC_01187]
MTSLHTGPQAEFTGIAPESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
IYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPYSETGRGQVSDLEIAA
KEIQRMRDQLEDMLTKHSTKEREAISSDIERDKILTAEESLEYGLIDQIVSTRKTSVEA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=663334 OG220_RS12900 WP_326690388.1 2870903..2871562(-) (clpP) [Streptomyces sp. NBC_01187]
ATGACCTCACTCCACACGGGACCGCAGGCCGAGTTCACCGGCATCGCACCGGAGTCCCGCTACGTCATCCCGCGCTTCGT
CGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCCTACGCGAAGCTCTTCGAAGAGCGCGTCATCTTCCTCGGCGTGC
AGATCGACGACGCCTCCGCAAACGACGTCATGGCTCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGGGACATCTCG
ATCTACATCAACTCCCCGGGCGGCTCCTTCACGGCGCTGACCGCGATCTACGACACCATGCAGTTCGTGAAGCCCGACAT
CCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGCACCCCCGGCAAGCGCATGGCGC
TGCCGAACGCGCGTATCCTCATCCACCAGCCCTACAGCGAGACGGGGCGCGGTCAGGTCTCCGACCTGGAGATCGCGGCC
AAGGAGATCCAGCGGATGCGCGATCAGCTGGAGGACATGCTCACCAAGCACTCCACCAAGGAGCGCGAAGCCATCTCCTC
GGACATCGAGCGTGACAAGATTCTCACCGCCGAGGAGTCGCTGGAGTACGGCCTGATCGACCAGATCGTCTCCACCCGCA
AGACCTCGGTCGAAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

86.758

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

85.845

0.429
  clpP Streptococcus mutans UA159

44.949

90.411

0.406
  clpP Streptococcus pyogenes MGAS315

44.845

88.584

0.397
  clpP Streptococcus pyogenes JRS4

44.845

88.584

0.397
  clpP Streptococcus pneumoniae R6

44.56

88.128

0.393
  clpP Streptococcus pneumoniae TIGR4

44.56

88.128

0.393
  clpP Streptococcus pneumoniae D39

44.56

88.128

0.393
  clpP Streptococcus pneumoniae Rx1

44.56

88.128

0.393
  clpP Streptococcus thermophilus LMD-9

44.33

88.584

0.393
  clpP Streptococcus thermophilus LMG 18311

44.33

88.584

0.393
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

87.215

0.393
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

87.215

0.384