NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG519_RS10225	Genome accession	NZ_CP108580
Coordinates	2439034..2439648 (-)	Length	204 a.a.
NCBI ID	WP_405592608.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01190
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2434034..2444648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG519_RS10210 (OG519_10185)	-	2435799..2436704 (+)	906	WP_405581554.1	hypothetical protein	-
OG519_RS10215 (OG519_10190)	clpX	2436783..2438066 (-)	1284	WP_405581556.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG519_RS10220 (OG519_10195)	clpP	2438241..2438924 (-)	684	WP_405581557.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG519_RS10225 (OG519_10200)	clpP	2439034..2439648 (-)	615	WP_405592608.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG519_RS10230 (OG519_10205)	tig	2440131..2441543 (-)	1413	WP_405581560.1	trigger factor	-
OG519_RS10245 (OG519_10220)	-	2442578..2443030 (-)	453	WP_405581562.1	Lrp/AsnC family transcriptional regulator	-
OG519_RS10250 (OG519_10225)	-	2443154..2444239 (+)	1086	WP_405581564.1	asparaginase	-
OG519_RS10255 (OG519_10230)	-	2444204..2444398 (-)	195	WP_405581567.1	hypothetical protein	-

Sequence

Protein

Download Length: 204 a.a. Molecular weight: 21553.51 Da Isoelectric Point: 4.7887

                                >NTDB_id=663272 OG519_RS10225 WP_405592608.1 2439034..2439648(-) (clpP) [Streptomyces sp. NBC_01190]

MPSAAGEPTFGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAAEPDKDIYLYINSPGGSVTAGMAIYDTMQFI

KNDVVTIAMGMAASMGQFLLTAGTPGKRFALPNTRILMHQPSAGLGGSATDIKIQAEQLLHTKRRMAELIAQHSGQTFEQ

ITKDSDRDRWFSAEEAQEYGLLDGVMLSAAHVPGGGGTGAGGPA

Nucleotide

Download Length: 615 bp

                                >NTDB_id=663272 OG519_RS10225 WP_405592608.1 2439034..2439648(-) (clpP) [Streptomyces sp. NBC_01190]

ATGCCTTCCGCCGCCGGCGAGCCGACCTTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGAATCAT

CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTTCTCCTGGCCGCCGAGCCGGACA

AGGACATCTACCTCTACATCAACAGCCCGGGCGGCTCCGTGACCGCCGGCATGGCCATCTACGACACGATGCAGTTCATC

AAGAACGACGTCGTCACGATCGCCATGGGCATGGCCGCCTCGATGGGCCAGTTCCTGCTCACCGCGGGCACCCCCGGCAA

GCGGTTCGCGCTGCCGAACACCCGCATCCTGATGCACCAGCCGTCCGCGGGCCTCGGCGGCTCCGCCACGGACATCAAGA

TCCAGGCCGAGCAGCTCCTGCACACCAAGCGCCGGATGGCCGAGCTGATCGCCCAGCACTCCGGCCAGACCTTCGAGCAG

ATCACCAAGGACTCCGACCGCGACCGCTGGTTCTCCGCCGAGGAGGCCCAGGAGTACGGCCTGCTGGACGGCGTGATGCT

CTCCGCCGCGCATGTGCCGGGCGGCGGCGGCACCGGCGCCGGCGGCCCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-186)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	54.545	91.667	0.5
clpP	Lactococcus lactis subsp. cremoris KW2	51.852	92.647	0.48
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.872	91.667	0.475
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.323	92.647	0.475
clpP	Streptococcus pyogenes JRS4	50.794	92.647	0.471
clpP	Streptococcus pyogenes MGAS315	50.794	92.647	0.471
clpP	Streptococcus mutans UA159	49.735	92.647	0.461
clpP	Streptococcus thermophilus LMG 18311	49.206	92.647	0.456
clpP	Streptococcus thermophilus LMD-9	49.206	92.647	0.456
clpP	Streptococcus pneumoniae Rx1	48.677	92.647	0.451
clpP	Streptococcus pneumoniae D39	48.677	92.647	0.451
clpP	Streptococcus pneumoniae R6	48.677	92.647	0.451
clpP	Streptococcus pneumoniae TIGR4	48.677	92.647	0.451

Detailed information NTG0663272