Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG519_RS10220 Genome accession   NZ_CP108580
Coordinates   2438241..2438924 (-) Length   227 a.a.
NCBI ID   WP_405581557.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01190     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433241..2443924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG519_RS10210 (OG519_10185) - 2435799..2436704 (+) 906 WP_405581554.1 hypothetical protein -
  OG519_RS10215 (OG519_10190) clpX 2436783..2438066 (-) 1284 WP_405581556.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG519_RS10220 (OG519_10195) clpP 2438241..2438924 (-) 684 WP_405581557.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG519_RS10225 (OG519_10200) clpP 2439034..2439648 (-) 615 WP_405592608.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG519_RS10230 (OG519_10205) tig 2440131..2441543 (-) 1413 WP_405581560.1 trigger factor -
  OG519_RS10245 (OG519_10220) - 2442578..2443030 (-) 453 WP_405581562.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25077.47 Da        Isoelectric Point: 4.5019

>NTDB_id=663271 OG519_RS10220 WP_405581557.1 2438241..2438924(-) (clpP) [Streptomyces sp. NBC_01190]
MNPLNFPGSGLYERTEAERPGVFGAEARYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLES
MDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARVLIHQPYSETGRGQ
VSDLEIAANEIIRMRQQLEEMLAKHSTTPIEQIRDDIERDKILTAEESLSYGLIDQIVSTRKTSVSV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=663271 OG519_RS10220 WP_405581557.1 2438241..2438924(-) (clpP) [Streptomyces sp. NBC_01190]
GTGAACCCCTTGAACTTCCCCGGCAGCGGCCTGTACGAGCGCACCGAGGCCGAACGGCCCGGTGTGTTCGGCGCCGAGGC
CCGCTATGTCATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGTGTGCGTGAGTACGACCCGTACGCCAAGCTCTTCGAGG
AGCGGGTGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCG
ATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACAC
CATGCAGTTCGTGAAGCCCGACATCCAGACGGTCTGCATGGGTCAGGCGGCCTCCGCCGCGGCGGTCCTGCTGGCGGCCG
GCAGCCCCGGCAAGCGGATGGCGCTGCCCAATGCGCGGGTACTCATCCACCAGCCGTACAGTGAGACCGGTCGCGGCCAG
GTGTCCGACCTGGAGATCGCCGCCAACGAGATCATCCGGATGCGGCAGCAGTTGGAGGAGATGCTCGCCAAGCACTCCAC
CACGCCGATCGAGCAGATCCGGGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGAGTCCCTCTCCTACGGTCTGA
TCGACCAGATCGTCTCCACCCGCAAGACCTCCGTGAGCGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(40-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

83.7

0.432
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

82.819

0.401
  clpP Streptococcus mutans UA159

46.392

85.463

0.396
  clpP Streptococcus pyogenes MGAS315

46.316

83.7

0.388
  clpP Streptococcus pyogenes JRS4

46.316

83.7

0.388
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus pneumoniae Rx1

44.56

85.022

0.379
  clpP Streptococcus pneumoniae D39

44.56

85.022

0.379
  clpP Streptococcus pneumoniae R6

44.56

85.022

0.379
  clpP Streptococcus pneumoniae TIGR4

44.56

85.022

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37