Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG702_RS24655 Genome accession   NZ_CP108568
Coordinates   5538768..5539442 (+) Length   224 a.a.
NCBI ID   WP_251489060.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01198     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5533768..5544442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG702_RS24625 (OG702_24655) - 5534546..5534752 (+) 207 WP_327291109.1 helix-turn-helix domain-containing protein -
  OG702_RS24630 (OG702_24660) - 5534752..5535900 (+) 1149 WP_327291110.1 site-specific integrase -
  OG702_RS24645 (OG702_24675) tig 5536419..5537810 (+) 1392 WP_327291111.1 trigger factor -
  OG702_RS24650 (OG702_24680) clpP 5538087..5538692 (+) 606 WP_327293355.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG702_RS24655 (OG702_24685) clpP 5538768..5539442 (+) 675 WP_251489060.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG702_RS24660 (OG702_24690) clpX 5539606..5540889 (+) 1284 WP_327291112.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG702_RS24665 (OG702_24695) - 5540974..5541993 (-) 1020 WP_327291113.1 hypothetical protein -
  OG702_RS24670 (OG702_24700) - 5542103..5543035 (-) 933 WP_327291114.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24764.11 Da        Isoelectric Point: 4.5079

>NTDB_id=663159 OG702_RS24655 WP_251489060.1 5538768..5539442(+) (clpP) [Streptomyces sp. NBC_01198]
MNFPGSGLYERTEAERPGVFGAEARYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEIIRMRQQLEEMLAKHSTTPIEQIREDIERDKILTAEESLAYGLVDQIVSTRKTSVNV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=663159 OG702_RS24655 WP_251489060.1 5538768..5539442(+) (clpP) [Streptomyces sp. NBC_01198]
ATGAACTTCCCCGGCAGCGGCCTGTACGAGCGCACCGAGGCCGAGCGGCCCGGCGTGTTCGGCGCCGAAGCCCGCTATGT
CATCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAACTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCCGCCGGCAGCCCCG
GCAAGCGGATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGGCAGGTCTCCGAC
CTGGAGATCGCGGCCAACGAGATCATCAGGATGCGGCAGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACCCCGAT
CGAGCAGATCAGGGAGGACATCGAGCGGGACAAGATCCTGACGGCCGAGGAGTCTCTGGCCTATGGTCTTGTCGACCAGA
TCGTCTCCACCCGCAAGACCTCTGTGAACGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.821

0.433
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

83.929

0.402
  clpP Streptococcus mutans UA159

45.876

86.607

0.397
  clpP Streptococcus pyogenes JRS4

46.316

84.821

0.393
  clpP Streptococcus pyogenes MGAS315

46.316

84.821

0.393
  clpP Streptococcus thermophilus LMD-9

44.33

86.607

0.384
  clpP Streptococcus thermophilus LMG 18311

44.33

86.607

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

85.268

0.379
  clpP Streptococcus pneumoniae Rx1

44.041

86.161

0.379
  clpP Streptococcus pneumoniae D39

44.041

86.161

0.379
  clpP Streptococcus pneumoniae R6

44.041

86.161

0.379
  clpP Streptococcus pneumoniae TIGR4

44.041

86.161

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

85.268

0.371