NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG702_RS24650	Genome accession	NZ_CP108568
Coordinates	5538087..5538692 (+)	Length	201 a.a.
NCBI ID	WP_327293355.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01198
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5533087..5543692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG702_RS24620 (OG702_24650)	repSA	5533155..5534543 (+)	1389	WP_327291108.1	replication initiator protein RepSA	-
OG702_RS24625 (OG702_24655)	-	5534546..5534752 (+)	207	WP_327291109.1	helix-turn-helix domain-containing protein	-
OG702_RS24630 (OG702_24660)	-	5534752..5535900 (+)	1149	WP_327291110.1	site-specific integrase	-
OG702_RS24645 (OG702_24675)	tig	5536419..5537810 (+)	1392	WP_327291111.1	trigger factor	-
OG702_RS24650 (OG702_24680)	clpP	5538087..5538692 (+)	606	WP_327293355.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG702_RS24655 (OG702_24685)	clpP	5538768..5539442 (+)	675	WP_251489060.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG702_RS24660 (OG702_24690)	clpX	5539606..5540889 (+)	1284	WP_327291112.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG702_RS24665 (OG702_24695)	-	5540974..5541993 (-)	1020	WP_327291113.1	hypothetical protein	-
OG702_RS24670 (OG702_24700)	-	5542103..5543035 (-)	933	WP_327291114.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21289.18 Da Isoelectric Point: 4.6455

                                >NTDB_id=663158 OG702_RS24650 WP_327293355.1 5538087..5538692(+) (clpP) [Streptomyces sp. NBC_01198]

MPSAAGEPNPGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAAEPDKDIFLYINSPGGSVTAGMAIYDTMQFI

QNDVVTIAMGMAASMGQFLLTAGTPGKRFALPNTRILMHQPSAGLGGSATDIKIQAEQLLHTKRRMAELIAQHSGQTFEQ

ITKDSDRDRWFSAEEAQEYGLLDGVMLSAAHVPGGGGTGAA

Nucleotide

Download Length: 606 bp

                                >NTDB_id=663158 OG702_RS24650 WP_327293355.1 5538087..5538692(+) (clpP) [Streptomyces sp. NBC_01198]

ATGCCTTCCGCCGCCGGCGAGCCGAACCCCGGTGGACTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGAATCAT

CTTCCTCGGCCAGGCCGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTGCTGGCCGCAGAGCCGGACA

AGGACATCTTCCTCTACATCAACAGCCCCGGCGGTTCGGTGACCGCGGGCATGGCGATCTACGACACCATGCAGTTCATC

CAGAACGACGTGGTCACCATCGCCATGGGCATGGCCGCCTCGATGGGGCAGTTCCTGCTCACCGCGGGCACCCCCGGCAA

GCGGTTCGCGCTGCCGAACACCCGGATCCTGATGCACCAGCCCTCCGCGGGCCTCGGCGGTTCCGCCACCGACATCAAGA

TCCAGGCGGAGCAGCTGCTGCACACCAAGCGCCGCATGGCCGAGCTGATCGCACAGCACTCGGGCCAGACCTTCGAGCAG

ATCACCAAGGACTCCGACCGGGACCGCTGGTTCTCGGCCGAGGAAGCCCAGGAGTACGGCCTGCTGGACGGGGTCATGCT

CTCCGCCGCGCATGTGCCCGGCGGCGGCGGCACCGGTGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-186)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	54.545	93.035	0.507
clpP	Lactococcus lactis subsp. cremoris KW2	50.794	94.03	0.478
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.265	94.03	0.473
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50.802	93.035	0.473
clpP	Streptococcus pyogenes JRS4	49.735	94.03	0.468
clpP	Streptococcus pyogenes MGAS315	49.735	94.03	0.468
clpP	Streptococcus mutans UA159	48.677	94.03	0.458
clpP	Streptococcus thermophilus LMG 18311	48.148	94.03	0.453
clpP	Streptococcus thermophilus LMD-9	48.148	94.03	0.453
clpP	Streptococcus pneumoniae Rx1	47.619	94.03	0.448
clpP	Streptococcus pneumoniae D39	47.619	94.03	0.448
clpP	Streptococcus pneumoniae R6	47.619	94.03	0.448
clpP	Streptococcus pneumoniae TIGR4	47.619	94.03	0.448

Detailed information NTG0663158