Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   OG295_RS31160 Genome accession   NZ_CP108442
Coordinates   6911327..6911530 (+) Length   67 a.a.
NCBI ID   WP_371679942.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01276     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6906327..6916530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS31135 (OG295_31110) - 6907239..6907661 (+) 423 WP_371679939.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG295_RS31140 - 6907805..6907959 (+) 155 Protein_6130 MerR family transcriptional regulator -
  OG295_RS31145 (OG295_31115) modA 6907994..6908815 (+) 822 WP_371679940.1 molybdate ABC transporter substrate-binding protein -
  OG295_RS31150 (OG295_31120) - 6908912..6910837 (+) 1926 WP_371679941.1 ABC transporter permease -
  OG295_RS31155 (OG295_31125) - 6910945..6911082 (-) 138 Protein_6133 PucR family transcriptional regulator -
  OG295_RS31160 (OG295_31130) pilT 6911327..6911530 (+) 204 WP_371679942.1 hypothetical protein Machinery gene
  OG295_RS31165 (OG295_31135) - 6912049..6912792 (-) 744 WP_371681361.1 DUF6071 family protein -
  OG295_RS31170 (OG295_31140) - 6912798..6914264 (-) 1467 WP_371679943.1 carbamoyltransferase C-terminal domain-containing protein -
  OG295_RS31175 (OG295_31145) - 6914494..6916182 (+) 1689 WP_371679944.1 alpha-amylase family glycosyl hydrolase -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 7409.64 Da        Isoelectric Point: 12.5033

>NTDB_id=660791 OG295_RS31160 WP_371679942.1 6911327..6911530(+) (pilT) [Streptomyces sp. NBC_01276]
MFPSGQQPQIRLQLAQTLVGILNQTLILRTGGGRVAAFEVPVGTAAIRNLIREGKNRVRDLSRRREA

Nucleotide


Download         Length: 204 bp        

>NTDB_id=660791 OG295_RS31160 WP_371679942.1 6911327..6911530(+) (pilT) [Streptomyces sp. NBC_01276]
GTGTTTCCGTCCGGGCAACAGCCGCAGATCCGGCTGCAATTGGCGCAGACCCTGGTCGGCATCCTCAACCAGACGCTCAT
CCTCCGGACCGGCGGGGGCCGGGTGGCCGCCTTCGAGGTGCCGGTGGGCACGGCGGCGATCCGCAACCTGATCCGCGAGG
GCAAGAACCGAGTGCGAGATCTGTCACGGCGGCGCGAAGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.877

85.075

0.433
  pilT Pseudomonas aeruginosa PAK

50.909

82.09

0.418
  pilT Pseudomonas stutzeri DSM 10701

49.091

82.09

0.403
  pilT Acinetobacter baylyi ADP1

49.091

82.09

0.403
  pilT Acinetobacter baumannii D1279779

47.273

82.09

0.388
  pilT Acinetobacter nosocomialis M2

47.273

82.09

0.388
  pilT Acinetobacter baumannii strain A118

47.273

82.09

0.388
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

45.455

82.09

0.373
  pilT Vibrio cholerae strain A1552

45.455

82.09

0.373