Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG564_RS29565 Genome accession   NZ_CP108438
Coordinates   6570306..6570965 (+) Length   219 a.a.
NCBI ID   WP_266670511.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01280     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6565306..6575965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG564_RS29535 (OG564_29540) - 6565578..6566726 (-) 1149 WP_266670516.1 acyltransferase family protein -
  OG564_RS29540 (OG564_29545) - 6567261..6567455 (+) 195 WP_100594330.1 hypothetical protein -
  OG564_RS29555 (OG564_29560) tig 6567972..6569360 (+) 1389 WP_329435239.1 trigger factor -
  OG564_RS29560 (OG564_29565) clpP 6569644..6570252 (+) 609 WP_116513663.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG564_RS29565 (OG564_29570) clpP 6570306..6570965 (+) 660 WP_266670511.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG564_RS29570 (OG564_29575) clpX 6571121..6572407 (+) 1287 WP_266564255.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG564_RS29575 (OG564_29580) - 6572492..6572944 (-) 453 WP_329435241.1 hypothetical protein -
  OG564_RS29580 (OG564_29585) - 6573122..6574069 (-) 948 WP_266670506.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24065.40 Da        Isoelectric Point: 4.5229

>NTDB_id=660603 OG564_RS29565 WP_266670511.1 6570306..6570965(+) (clpP) [Streptomyces sp. NBC_01280]
MNNIPGSGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISIY
INSPGGSFTALTAIYDTMQFVKPDIQTVCMGQASSAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAANE
ILRMREQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIISTRKMNNTAAA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=660603 OG564_RS29565 WP_266670511.1 6570306..6570965(+) (clpP) [Streptomyces sp. NBC_01280]
ATGAACAACATCCCCGGCAGCGGTCTGTACACCGGCCCGCAGGTCGACAACCGCTACGTGATCCCGCGCTTCGTCGAGCG
CACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGTGTGATCTTCCTCGGCGTGCAGATCG
ACGACGCGTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCCATCTAC
ATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCAGAC
GGTCTGCATGGGCCAGGCGTCCTCCGCGGCCGCCGTGCTCCTCGCGGCCGGTACGCCGGGCAAGCGCATGGCGCTGCCGA
ACGCCCGCGTCCTGATCCACCAGCCCTCCGGCGGCACCGGCCGCGAGCAGCTCTCCGACCTGGAGATCGCCGCGAACGAG
ATCCTCCGGATGCGTGAGCAGCTCGAGGAGATGCTGGCCAAGCACTCCACGACGCCGATCGAGAAGATCCGCGACGACAT
CGAGCGCGACAAGATCCTGACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGACCAGATCATCTCCACCCGGAAGATGA
ACAACACCGCGGCCGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

86.758

0.452
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

85.845

0.425
  clpP Streptococcus thermophilus LMD-9

45.641

89.041

0.406
  clpP Streptococcus pyogenes JRS4

45.641

89.041

0.406
  clpP Streptococcus pyogenes MGAS315

45.641

89.041

0.406
  clpP Streptococcus thermophilus LMG 18311

45.641

89.041

0.406
  clpP Streptococcus pneumoniae R6

44.898

89.498

0.402
  clpP Streptococcus pneumoniae Rx1

44.898

89.498

0.402
  clpP Streptococcus pneumoniae D39

44.898

89.498

0.402
  clpP Streptococcus pneumoniae TIGR4

44.898

89.498

0.402
  clpP Streptococcus mutans UA159

45.128

89.041

0.402
  clpP Lactococcus lactis subsp. cremoris KW2

43.878

89.498

0.393
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.857

89.498

0.384