Detailed information NTG0660604

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG564_RS29570
• Genome accession: NZ_CP108438
• Coordinates: 6571121..6572407 (+)
• Length: 428 a.a.
• NCBI ID: WP_266564255.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01280
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6566121..6577407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG564_RS29540 (OG564_29545)	-	6567261..6567455 (+)	195	WP_100594330.1	hypothetical protein	-
OG564_RS29555 (OG564_29560)	tig	6567972..6569360 (+)	1389	WP_329435239.1	trigger factor	-
OG564_RS29560 (OG564_29565)	clpP	6569644..6570252 (+)	609	WP_116513663.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG564_RS29565 (OG564_29570)	clpP	6570306..6570965 (+)	660	WP_266670511.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG564_RS29570 (OG564_29575)	clpX	6571121..6572407 (+)	1287	WP_266564255.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG564_RS29575 (OG564_29580)	-	6572492..6572944 (-)	453	WP_329435241.1	hypothetical protein	-
OG564_RS29580 (OG564_29585)	-	6573122..6574069 (-)	948	WP_266670506.1	hypothetical protein	-
OG564_RS29585 (OG564_29590)	-	6574255..6576885 (+)	2631	WP_329435243.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46822.50 Da
• Isoelectric Point: 4.7856

>NTDB_id=660604 OG564_RS29570 WP_266564255.1 6571121..6572407(+) (clpX) [Streptomyces sp. NBC_01280]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELSKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIHSKRELEEKDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILLEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRRTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
AEAVHSNVNPTLIPRDARGSGSGEQKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=660604 OG564_RS29570 WP_266564255.1 6571121..6572407(+) (clpX) [Streptomyces sp. NBC_01280]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAGACGA
GCGAGGTCCGCTGGGAAGAACTTCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAAGGCTATGTCGTCGGCCAGGAGGCC
GCGAAGAAAGCCCTCTCGGTCGCTGTGTACAACCATTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGAGCCCAGGGACG
CGACGACGCGATCGAGCTGTCGAAGTCCAACATCCTGCTCCTGGGCCCCACGGGCTCGGGCAAGACACTCCTGGCCCAGA
CCCTGGCCCGCATGCTGAACGTTCCGTTCGCCATCGCCGACGCGACGGCGCTCACGGAGGCCGGCTATGTGGGCGAGGAC
GTCGAGAACATCCTCCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTGTCCGGTGAGGGCGTCCAGCAGGCTC
TGCTCAAGATCCTTGAGGGGACCACGGCTTCCGTCCCGCCCCAGGGCGGCCGCAAGCACCCCCATCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCGCCGGACTGGAGAAGATCATCGAGTCGCGGGCGGGTGC
CAAGGGCATCGGCTTCGGCGCGACGATCCACTCCAAGCGCGAGCTGGAGGAGAAGGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCGCTCCTCCAGATTCTCCTGGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCCGCACCGGCGCGCGCGGCCTGC
GCGCGATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGAGGTCCCCTCCCGCAAGGACGTGGCCCGCGTCGTCATCACG
GCAGAGGCCGTCCACTCGAACGTGAACCCGACGCTGATCCCCCGCGACGCCCGCGGCTCGGGCAGCGGAGAGCAGAAGTC
CGCCTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.925	0.596
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.745	96.028	0.526