Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG564_RS29560 Genome accession   NZ_CP108438
Coordinates   6569644..6570252 (+) Length   202 a.a.
NCBI ID   WP_116513663.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01280     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 6564644..6575252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG564_RS29530 (OG564_29535) - 6565052..6565495 (+) 444 WP_266670518.1 HD domain-containing protein -
  OG564_RS29535 (OG564_29540) - 6565578..6566726 (-) 1149 WP_266670516.1 acyltransferase family protein -
  OG564_RS29540 (OG564_29545) - 6567261..6567455 (+) 195 WP_100594330.1 hypothetical protein -
  OG564_RS29555 (OG564_29560) tig 6567972..6569360 (+) 1389 WP_329435239.1 trigger factor -
  OG564_RS29560 (OG564_29565) clpP 6569644..6570252 (+) 609 WP_116513663.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG564_RS29565 (OG564_29570) clpP 6570306..6570965 (+) 660 WP_266670511.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG564_RS29570 (OG564_29575) clpX 6571121..6572407 (+) 1287 WP_266564255.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG564_RS29575 (OG564_29580) - 6572492..6572944 (-) 453 WP_329435241.1 hypothetical protein -
  OG564_RS29580 (OG564_29585) - 6573122..6574069 (-) 948 WP_266670506.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21335.11 Da        Isoelectric Point: 4.4672

>NTDB_id=660602 OG564_RS29560 WP_116513663.1 6569644..6570252(+) (clpP) [Streptomyces sp. NBC_01280]
MPSAAGEPSLGGGLGDQVYSRLLNDRIIFLGQQVDDEIANKITAQMLLLAAADQDKDIYLYINSPGGSVTAGMAVYDTMQ
YIQNDVVTIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDVKIQAEYLLRTKKRMAEITARHSGQTV
ETIIRDGDRDRWYTAEEAKEYGLIDEIISAATGVPGGGGTGA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=660602 OG564_RS29560 WP_116513663.1 6569644..6570252(+) (clpP) [Streptomyces sp. NBC_01280]
ATGCCCTCCGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCAACGACCGCAT
CATCTTCCTGGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACTGCCCAGATGCTCCTCCTGGCCGCTGCCGACC
AGGACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGTTCGGTGACGGCCGGCATGGCGGTCTACGACACCATGCAG
TACATCCAGAACGACGTCGTCACCATCGGCATGGGCATGGCCGCCTCCATGGGCCAGTTCCTGCTGACCGGCGGTACTCC
GGGCAAGCGCTTCGCGCTTCCGAACACGGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGTACGGCTTCGGACG
TCAAGATCCAGGCCGAGTACCTGCTGCGCACCAAGAAGCGCATGGCGGAGATCACCGCCCGGCACTCCGGGCAGACCGTC
GAGACGATCATCCGTGACGGTGACCGCGACCGCTGGTACACCGCCGAAGAGGCCAAGGAGTACGGCCTCATCGACGAGAT
CATCAGTGCCGCTACGGGTGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

52.105

94.059

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.579

94.059

0.485
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.892

91.584

0.475
  clpP Bacillus subtilis subsp. subtilis str. 168

54.651

85.149

0.465
  clpP Streptococcus mutans UA159

53.757

85.644

0.46
  clpP Streptococcus thermophilus LMG 18311

52.299

86.139

0.45
  clpP Streptococcus thermophilus LMD-9

52.299

86.139

0.45
  clpP Streptococcus pyogenes JRS4

52.601

85.644

0.45
  clpP Streptococcus pyogenes MGAS315

52.601

85.644

0.45
  clpP Streptococcus pneumoniae Rx1

51.724

86.139

0.446
  clpP Streptococcus pneumoniae D39

51.724

86.139

0.446
  clpP Streptococcus pneumoniae R6

51.724

86.139

0.446
  clpP Streptococcus pneumoniae TIGR4

51.724

86.139

0.446