Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG730_RS38740 Genome accession   NZ_CP108414
Coordinates   8485818..8486810 (+) Length   330 a.a.
NCBI ID   WP_327308683.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8480818..8491810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS38725 (OG730_38690) - 8481635..8482222 (-) 588 WP_327308681.1 DUF305 domain-containing protein -
  OG730_RS38730 (OG730_38695) - 8482198..8483568 (-) 1371 WP_327308682.1 DUF1996 domain-containing protein -
  OG730_RS38735 (OG730_38700) - 8483704..8485368 (-) 1665 WP_327309587.1 discoidin domain-containing protein -
  OG730_RS38740 (OG730_38705) cytR 8485818..8486810 (+) 993 WP_327308683.1 LacI family DNA-binding transcriptional regulator Regulator
  OG730_RS38745 (OG730_38710) - 8487214..8488053 (-) 840 WP_327308684.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  OG730_RS38750 (OG730_38715) - 8488116..8488859 (-) 744 WP_327309588.1 Asp/Glu racemase -
  OG730_RS38755 (OG730_38720) - 8488963..8489877 (-) 915 WP_327308685.1 fumarylacetoacetate hydrolase family protein -
  OG730_RS38760 (OG730_38725) - 8489977..8491089 (-) 1113 WP_327308686.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35273.28 Da        Isoelectric Point: 5.8742

>NTDB_id=660281 OG730_RS38740 WP_327308683.1 8485818..8486810(+) (cytR) [Streptomyces sp. NBC_01298]
MRRPTLEVVAARAGVSRSSVSRVVNGEATVAPEIREVVMRAVRELGYVPNAAARNLVTRRTDAVAVVVSDPPQGVVSDDP
LFSTVVRAVSRELEAAGKQGVLMLAESDRSRARVEEYVAGGHVDGVMLVALHGTDPLPAALARTGLPVASFNRTCAPDVP
YVELDNAAGAALAVRHLLERGRRRIATITGPLDLFEARERLDGYRAALRGTDRRSIVALGDFTRASGAEAMRQLLEDDPE
LDAVFAANDLMAIGALRTLRQVGLRVPEDVAVVGFDDIEAASYTVPALTSVRSPMADQARATVRLLLGLIEGGSRERVVM
PNDLVVRESS

Nucleotide


Download         Length: 993 bp        

>NTDB_id=660281 OG730_RS38740 WP_327308683.1 8485818..8486810(+) (cytR) [Streptomyces sp. NBC_01298]
ATGAGAAGACCCACGCTGGAAGTGGTCGCCGCCCGGGCAGGCGTGTCCCGGTCGAGCGTCTCCCGTGTAGTCAACGGGGA
GGCCACGGTCGCGCCCGAGATCCGTGAAGTAGTCATGCGGGCCGTGCGCGAACTGGGCTACGTTCCCAACGCCGCCGCCC
GCAACCTGGTCACCCGCCGGACCGACGCGGTGGCCGTGGTCGTCTCCGATCCGCCCCAGGGCGTCGTCTCCGACGACCCC
CTCTTCTCCACCGTGGTCCGCGCCGTCAGCCGGGAACTGGAGGCCGCCGGAAAACAGGGCGTGCTCATGCTCGCCGAATC
CGACCGGAGCCGGGCGCGGGTCGAGGAGTACGTGGCCGGCGGACACGTGGACGGCGTCATGCTCGTCGCCCTGCACGGTA
CGGACCCCCTGCCCGCCGCCCTGGCCAGGACGGGCCTGCCGGTCGCCTCGTTCAACCGCACCTGCGCCCCGGACGTGCCG
TACGTGGAACTGGACAACGCCGCCGGCGCCGCGCTCGCCGTACGCCACCTCCTGGAACGGGGCCGGCGCCGGATCGCCAC
CATCACCGGACCGCTGGACCTCTTCGAGGCCCGCGAGCGCCTCGACGGATACCGCGCCGCCCTGCGCGGCACCGACCGCC
GGTCCATCGTGGCGCTGGGCGATTTCACCCGGGCCTCCGGAGCCGAGGCGATGCGGCAGCTGCTGGAGGACGACCCGGAA
CTGGACGCGGTGTTCGCGGCCAACGACCTGATGGCCATCGGCGCCCTGCGCACCCTGCGGCAGGTGGGCCTGCGGGTCCC
CGAGGACGTGGCCGTCGTCGGCTTCGACGACATAGAGGCGGCCTCCTACACCGTCCCCGCCCTCACCTCGGTGCGCAGTC
CCATGGCCGACCAGGCCAGGGCCACGGTGCGGCTGCTCCTGGGCCTGATCGAGGGCGGCTCCCGGGAGCGGGTGGTCATG
CCGAACGACCTGGTGGTCCGGGAATCCTCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.101

100

0.388
  cytR Vibrio parahaemolyticus RIMD 2210633

35.652

100

0.373