Detailed information NTG0066008

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SMUNUM_RS09325
• Genome accession: NZ_AP014571
• Coordinates: 1883671..1884075 (-)
• Length: 134 a.a.
• NCBI ID: WP_002264246.1
• Uniprot ID: -
• Organism: Streptococcus mutans LP13
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1878671..1889075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMUNUM_RS09290 (SMNUM_1765)	-	1878806..1879051 (-)	246	WP_002268893.1	helix-turn-helix transcriptional regulator	-
SMUNUM_RS09295	tnpA	1879676..1880139 (-)	464	Protein_1786	IS200/IS605 family transposase	-
SMUNUM_RS09300 (SMNUM_1767)	-	1880352..1881551 (-)	1200	WP_002263443.1	acetate kinase	-
SMUNUM_RS09305 (SMNUM_1768)	comYH	1881610..1882563 (-)	954	WP_019805509.1	class I SAM-dependent methyltransferase	Machinery gene
SMUNUM_RS09310 (SMNUM_1769)	comYG	1882618..1883007 (-)	390	WP_019805510.1	competence type IV pilus minor pilin ComGG	Machinery gene
SMUNUM_RS09315 (SMNUM_1770)	comYF	1882985..1883419 (-)	435	WP_002263440.1	competence type IV pilus minor pilin ComGF	Machinery gene
SMUNUM_RS09320 (SMNUM_1771)	comYE	1883406..1883699 (-)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
SMUNUM_RS09325 (SMNUM_1772)	comYD	1883671..1884075 (-)	405	WP_002264246.1	competence type IV pilus minor pilin ComGD	Machinery gene
SMUNUM_RS09330 (SMNUM_1773)	comYC	1884062..1884376 (-)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
SMUNUM_RS09335 (SMNUM_1774)	comYB	1884376..1885407 (-)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
SMUNUM_RS09340 (SMNUM_1775)	comYA	1885343..1886284 (-)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
SMUNUM_RS09345 (SMNUM_1776)	-	1886414..1886797 (-)	384	WP_019805511.1	DUF1033 family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15425.73 Da
• Isoelectric Point: 9.2271

>NTDB_id=66008 SMUNUM_RS09325 WP_002264246.1 1883671..1884075(-) (comYD) [Streptococcus mutans LP13]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEEHLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=66008 SMUNUM_RS09325 WP_002264246.1 1883671..1884075(-) (comYD) [Streptococcus mutans LP13]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCATCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	99.254	100	0.993
comYD	Streptococcus mutans UA159	99.254	100	0.993
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388